count5end: count reads by regions
In jianhong/diffPeaks: Quantifying Differential Features
Description
Usage
Arguments
Value
Description
help function for callPeak
Usage
1
count5end(bamfile, index, region, ideaPeakWidth)
Arguments
bamfile
bam file name
index
index file name
region
an object of GRanges for counting.
ideaPeakWidth
ideally peak width, eg, ATAC-seq: 200bp
Value
an object of GRanges with counting
jianhong/diffPeaks documentation built on May 22, 2019, 12:37 p.m.
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Description Usage Arguments Value
Description
help function for callPeak
Usage
1 | count5end(bamfile, index, region, ideaPeakWidth)
|
Arguments
bamfile |
bam file name |
index |
index file name |
region |
an object of GRanges for counting. |
ideaPeakWidth |
ideally peak width, eg, ATAC-seq: 200bp |
Value
an object of GRanges with counting
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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