|CMHpeaks||differential binding analysis by Cochran-Mantel-Haenszel Test|
|count5end||count reads by regions|
|countTable||Counting reads in features|
|DBFpeaks||differential binding analysis|
|DEpeaks||differential binding analysis|
|diffPeaks-package||Quantifying Differential Features|
|FTpeaks||differential binding analysis by Fisher's exact test|
|IntersectionNotStrict||Count reads overlapping genomic ranges|
|isCountTable||is output of countTable|
|mergePeaks||Merge BED files|
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