mergePeaks: Merge BED files

In jianhong/diffPeaks: Quantifying Differential Features

Description

Merge multiple peak files

Usage

mergePeaks(peaks, maxPeakWidth = 5000, ...)

Arguments

peaks	BED filenames which indicate the peaks or an GRangesList or GRanges object could be used as input peaks.
maxPeakWidth	maximal peak width. If greater than maxPeakWidth, the peak will be divided in half to fit the parameter.
...	parameters could be passed to import

Value

an object of GRanges

Author(s)

Jianhong Ou

Examples

path <- system.file("extdata", package = "diffPeaks", mustWork = TRUE)
peaks <- dir(path, "bed$")
p <- mergePeaks(file.path(path, peaks))

jianhong/diffPeaks documentation built on May 22, 2019, 12:37 p.m.