TODO.md

In jimhester/primerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs

Documentation

[x] - figure out a good name. [x] - document all exported functions with examples [ ] - create vignette showing workflow by piece and automatic [x] - write wrapping function for entire workflow [x] - implement plot_rank function to plot a single rank by itself

Implementation

[x] - filter alignments for exact sequences (how to handle different taxa???) [x] - handle hits to the same gi at different locations, this will crash clustalw currently. # USE CLUSTALO [ ] - enumerate dropdown options [x] - very degenerate primers? [x] - specify clustalo parameters, location [x] - retry failed connections

Paper

[x] - submit paper to bioinformatics [ ] - submit package to CRAN

jimhester/primerTree documentation built on Oct. 15, 2023, 11:06 p.m.