jinghuazhao/pQTLtools: A Protein Quantitative Trait Locus Toolkit

It collects data and utilities for pQTL analysis, including 1. Protein GWAS facilities such as Manhattan/QQ/LocusZoom.js plots, novelty/consequence checking; 2. Articles linking functions for cis/trans classification, pQTL-gene plot, 2d/3d-plotly plots, forest plots among others available from gap, <https://cran.r-project.org/package=gap>, as well as colocalization, pQTL-Mendelian Randomization via TwoSampleMR. <https://mrcieu.github.io/TwoSampleMR/>; 3. Query on genes, regions, and SNPs via PhenoScanner, <http://www.phenoscanner.medschl.cam.ac.uk/>. 4. Mapping of UniProt IDs to other resources; 5. Showcases of Bioconductor, <https://github.com/bioconductor>, and snakemake, <https://github.com/snakemake>.

install.packages("remotes")
remotes::install_github("jinghuazhao/pQTLtools")