jinghuazhao/pQTLtools: A Protein Quantitative Trait Locus Toolkit
It collects data and utilities for pQTL analysis, including 1. Protein GWAS facilities such as Manhattan/QQ/LocusZoom.js plots, novelty/consequence checking; 2. Articles linking functions for cis/trans classification, pQTL-gene plot, 2d/3d-plotly plots, forest plots among others available from gap, <https://cran.r-project.org/package=gap>, as well as colocalization, pQTL-Mendelian Randomization via TwoSampleMR. <https://mrcieu.github.io/TwoSampleMR/>; 3. Query on genes, regions, and SNPs via PhenoScanner, <http://www.phenoscanner.medschl.cam.ac.uk/>. 4. Mapping of UniProt IDs to other resources; 5. Showcases of Bioconductor, <https://github.com/bioconductor>, and snakemake, <https://github.com/snakemake>.
Getting started
Browse package contents
Package details |
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| Maintainer | |
| License | MIT + file LICENSE |
| Version | 0.4 |
| URL | https://github.com/jinghuazhao/pQTLtools |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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