Files in jinghuazhao/pQTLtools
A Protein Quantitative Trait Locus Toolkit

.Rbuildignore
.Rinstignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md R/pQTLtools.R R/peptideAssociationPlot.R R/turboman.r R/turboqq.r R/utils.R README.Rmd README.md
docs/.nojekyll
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/LocusZoom.js.html
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/bootstrap-theme.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/bootstrap-theme.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/bootstrap.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/bootstrap.css.map
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/bootstrap.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/cerulean.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/cosmo.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/darkly.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/flatly.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/Lato.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/LatoBold.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/OpenSans.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/Raleway.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/Roboto.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/journal.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/lumen.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/paper.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/readable.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/sandstone.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/simplex.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/spacelab.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/united.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/css/yeti.min.css
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/js/bootstrap.js
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/js/bootstrap.min.js
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/js/npm.js
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/shim/html5shiv.min.js
docs/articles/LocusZoom.js_files/bootstrap-3.3.5/shim/respond.min.js
docs/articles/LocusZoom.js_files/figure-html/unnamed-chunk-2-1.png
docs/articles/LocusZoom.js_files/jquery-3.6.0/jquery-3.6.0.js
docs/articles/LocusZoom.js_files/jquery-3.6.0/jquery-3.6.0.min.js
docs/articles/LocusZoom.js_files/jquery-3.6.0/jquery-3.6.0.min.map
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/AUTHORS.txt
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/LICENSE.txt
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/images/ui-icons_444444_256x240.png
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/images/ui-icons_555555_256x240.png
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/images/ui-icons_777620_256x240.png
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/images/ui-icons_777777_256x240.png
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/images/ui-icons_cc0000_256x240.png
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/images/ui-icons_ffffff_256x240.png
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/index.html
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/jquery-ui.css
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/jquery-ui.js
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/jquery-ui.min.css
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/jquery-ui.min.js
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/jquery-ui.structure.css
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/jquery-ui.structure.min.css
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/jquery-ui.theme.css
docs/articles/LocusZoom.js_files/jqueryui-1.13.2/jquery-ui.theme.min.css
docs/articles/LocusZoom.js_files/navigation-1.1/codefolding-lua.css
docs/articles/LocusZoom.js_files/navigation-1.1/codefolding.js
docs/articles/LocusZoom.js_files/navigation-1.1/sourceembed.js
docs/articles/LocusZoom.js_files/navigation-1.1/tabsets.js
docs/articles/LocusZoom.js_files/tocify-1.9.1/jquery.tocify.css
docs/articles/LocusZoom.js_files/tocify-1.9.1/jquery.tocify.js
docs/articles/SCALLOP-INF.html
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/bootstrap-theme.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/bootstrap-theme.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/bootstrap.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/bootstrap.css.map
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/bootstrap.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/cerulean.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/cosmo.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/darkly.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/flatly.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/Lato.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/LatoBold.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/OpenSans.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/Raleway.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/Roboto.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/journal.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/lumen.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/paper.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/readable.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/sandstone.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/simplex.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/spacelab.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/united.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/css/yeti.min.css
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/js/bootstrap.js
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/js/bootstrap.min.js
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/js/npm.js
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/shim/html5shiv.min.js
docs/articles/SCALLOP-INF_files/bootstrap-3.3.5/shim/respond.min.js
docs/articles/SCALLOP-INF_files/jquery-3.6.0/jquery-3.6.0.js
docs/articles/SCALLOP-INF_files/jquery-3.6.0/jquery-3.6.0.min.js
docs/articles/SCALLOP-INF_files/jquery-3.6.0/jquery-3.6.0.min.map
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/README
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/images/ui-icons_444444_256x240.png
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/images/ui-icons_555555_256x240.png
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/images/ui-icons_777620_256x240.png
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/images/ui-icons_777777_256x240.png
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/images/ui-icons_cc0000_256x240.png
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/images/ui-icons_ffffff_256x240.png
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/index.html
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/jquery-ui.css
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/jquery-ui.js
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/jquery-ui.min.css
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/jquery-ui.min.js
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/jquery-ui.structure.css
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/jquery-ui.structure.min.css
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/jquery-ui.theme.css
docs/articles/SCALLOP-INF_files/jqueryui-1.11.4/jquery-ui.theme.min.css
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/AUTHORS.txt
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/LICENSE.txt
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/images/ui-icons_444444_256x240.png
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/images/ui-icons_555555_256x240.png
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/images/ui-icons_777620_256x240.png
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/images/ui-icons_777777_256x240.png
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/images/ui-icons_cc0000_256x240.png
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/images/ui-icons_ffffff_256x240.png
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/index.html
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/jquery-ui.css
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/jquery-ui.js
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/jquery-ui.min.css
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/jquery-ui.min.js
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/jquery-ui.structure.css
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/jquery-ui.structure.min.css
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/jquery-ui.theme.css
docs/articles/SCALLOP-INF_files/jqueryui-1.13.2/jquery-ui.theme.min.css
docs/articles/SCALLOP-INF_files/navigation-1.1/codefolding-lua.css
docs/articles/SCALLOP-INF_files/navigation-1.1/codefolding.js
docs/articles/SCALLOP-INF_files/navigation-1.1/sourceembed.js
docs/articles/SCALLOP-INF_files/navigation-1.1/tabsets.js
docs/articles/SCALLOP-INF_files/tocify-1.9.1/jquery.tocify.css
docs/articles/SCALLOP-INF_files/tocify-1.9.1/jquery.tocify.js
docs/articles/SF-pQTL-GWAS.png
docs/articles/bioconductor.html
docs/articles/bioconductor/ComBat-1.png
docs/articles/bioconductor/ComBat-2.png
docs/articles/bioconductor/ComBat-3.png
docs/articles/bioconductor/ComBat-4.png
docs/articles/bioconductor/DESeq2-1.png
docs/articles/bioconductor/GeneNet-1.png
docs/articles/bioconductor/GeneNet-2.png
docs/articles/bioconductor/GeneNet-3.png
docs/articles/bioconductor/a1bg-1.png
docs/articles/bioconductor/heatmap-1.png
docs/articles/bioconductor/ods-1.png
docs/articles/bioconductor/quantro-1.png
docs/articles/bioconductor/quantro-2.png
docs/articles/bioconductor_files/bootstrap-3.3.5/css/bootstrap-theme.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
docs/articles/bioconductor_files/bootstrap-3.3.5/css/bootstrap-theme.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/bootstrap.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/bootstrap.css.map
docs/articles/bioconductor_files/bootstrap-3.3.5/css/bootstrap.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/cerulean.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/cosmo.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/darkly.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/flatly.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/Lato.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/LatoBold.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/OpenSans.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/Raleway.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/Roboto.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/css/journal.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/lumen.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/paper.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/readable.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/sandstone.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/simplex.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/spacelab.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/united.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/css/yeti.min.css
docs/articles/bioconductor_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
docs/articles/bioconductor_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
docs/articles/bioconductor_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
docs/articles/bioconductor_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
docs/articles/bioconductor_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
docs/articles/bioconductor_files/bootstrap-3.3.5/js/bootstrap.js
docs/articles/bioconductor_files/bootstrap-3.3.5/js/bootstrap.min.js
docs/articles/bioconductor_files/bootstrap-3.3.5/js/npm.js
docs/articles/bioconductor_files/bootstrap-3.3.5/shim/html5shiv.min.js
docs/articles/bioconductor_files/bootstrap-3.3.5/shim/respond.min.js
docs/articles/bioconductor_files/crosstalk-1.2.0/css/crosstalk.min.css
docs/articles/bioconductor_files/crosstalk-1.2.0/js/crosstalk.js
docs/articles/bioconductor_files/crosstalk-1.2.0/js/crosstalk.js.map
docs/articles/bioconductor_files/crosstalk-1.2.0/js/crosstalk.min.js
docs/articles/bioconductor_files/crosstalk-1.2.0/js/crosstalk.min.js.map
docs/articles/bioconductor_files/crosstalk-1.2.0/scss/crosstalk.scss
docs/articles/bioconductor_files/crosstalk-1.2.1/css/crosstalk.min.css
docs/articles/bioconductor_files/crosstalk-1.2.1/js/crosstalk.js
docs/articles/bioconductor_files/crosstalk-1.2.1/js/crosstalk.js.map
docs/articles/bioconductor_files/crosstalk-1.2.1/js/crosstalk.min.js
docs/articles/bioconductor_files/crosstalk-1.2.1/js/crosstalk.min.js.map
docs/articles/bioconductor_files/crosstalk-1.2.1/scss/crosstalk.scss
docs/articles/bioconductor_files/htmltools-fill-0.5.8.1/fill.css
docs/articles/bioconductor_files/htmltools-fill-0.5.8/fill.css
docs/articles/bioconductor_files/htmlwidgets-1.6.0/htmlwidgets.js
docs/articles/bioconductor_files/htmlwidgets-1.6.1/htmlwidgets.js
docs/articles/bioconductor_files/htmlwidgets-1.6.2/htmlwidgets.js
docs/articles/bioconductor_files/htmlwidgets-1.6.4/htmlwidgets.js
docs/articles/bioconductor_files/jquery-3.6.0/jquery-3.6.0.js
docs/articles/bioconductor_files/jquery-3.6.0/jquery-3.6.0.min.js
docs/articles/bioconductor_files/jquery-3.6.0/jquery-3.6.0.min.map
docs/articles/bioconductor_files/jqueryui-1.11.4/README
docs/articles/bioconductor_files/jqueryui-1.11.4/images/ui-icons_444444_256x240.png
docs/articles/bioconductor_files/jqueryui-1.11.4/images/ui-icons_555555_256x240.png
docs/articles/bioconductor_files/jqueryui-1.11.4/images/ui-icons_777620_256x240.png
docs/articles/bioconductor_files/jqueryui-1.11.4/images/ui-icons_777777_256x240.png
docs/articles/bioconductor_files/jqueryui-1.11.4/images/ui-icons_cc0000_256x240.png
docs/articles/bioconductor_files/jqueryui-1.11.4/images/ui-icons_ffffff_256x240.png
docs/articles/bioconductor_files/jqueryui-1.11.4/index.html
docs/articles/bioconductor_files/jqueryui-1.11.4/jquery-ui.css
docs/articles/bioconductor_files/jqueryui-1.11.4/jquery-ui.js
docs/articles/bioconductor_files/jqueryui-1.11.4/jquery-ui.min.css
docs/articles/bioconductor_files/jqueryui-1.11.4/jquery-ui.min.js
docs/articles/bioconductor_files/jqueryui-1.11.4/jquery-ui.structure.css
docs/articles/bioconductor_files/jqueryui-1.11.4/jquery-ui.structure.min.css
docs/articles/bioconductor_files/jqueryui-1.11.4/jquery-ui.theme.css
docs/articles/bioconductor_files/jqueryui-1.11.4/jquery-ui.theme.min.css
docs/articles/bioconductor_files/jqueryui-1.13.2/AUTHORS.txt
docs/articles/bioconductor_files/jqueryui-1.13.2/LICENSE.txt
docs/articles/bioconductor_files/jqueryui-1.13.2/images/ui-icons_444444_256x240.png
docs/articles/bioconductor_files/jqueryui-1.13.2/images/ui-icons_555555_256x240.png
docs/articles/bioconductor_files/jqueryui-1.13.2/images/ui-icons_777620_256x240.png
docs/articles/bioconductor_files/jqueryui-1.13.2/images/ui-icons_777777_256x240.png
docs/articles/bioconductor_files/jqueryui-1.13.2/images/ui-icons_cc0000_256x240.png
docs/articles/bioconductor_files/jqueryui-1.13.2/images/ui-icons_ffffff_256x240.png
docs/articles/bioconductor_files/jqueryui-1.13.2/index.html
docs/articles/bioconductor_files/jqueryui-1.13.2/jquery-ui.css
docs/articles/bioconductor_files/jqueryui-1.13.2/jquery-ui.js
docs/articles/bioconductor_files/jqueryui-1.13.2/jquery-ui.min.css
docs/articles/bioconductor_files/jqueryui-1.13.2/jquery-ui.min.js
docs/articles/bioconductor_files/jqueryui-1.13.2/jquery-ui.structure.css
docs/articles/bioconductor_files/jqueryui-1.13.2/jquery-ui.structure.min.css
docs/articles/bioconductor_files/jqueryui-1.13.2/jquery-ui.theme.css
docs/articles/bioconductor_files/jqueryui-1.13.2/jquery-ui.theme.min.css
docs/articles/bioconductor_files/navigation-1.1/codefolding-lua.css
docs/articles/bioconductor_files/navigation-1.1/codefolding.js
docs/articles/bioconductor_files/navigation-1.1/sourceembed.js
docs/articles/bioconductor_files/navigation-1.1/tabsets.js
docs/articles/bioconductor_files/plotly-binding-4.10.1/plotly.js
docs/articles/bioconductor_files/plotly-binding-4.10.2/plotly.js
docs/articles/bioconductor_files/plotly-binding-4.10.3/plotly.js
docs/articles/bioconductor_files/plotly-binding-4.10.4/plotly.js
docs/articles/bioconductor_files/plotly-htmlwidgets-css-2.11.1/plotly-htmlwidgets.css
docs/articles/bioconductor_files/plotly-main-2.11.1/plotly-latest.min.js
docs/articles/bioconductor_files/tocify-1.9.1/jquery.tocify.css
docs/articles/bioconductor_files/tocify-1.9.1/jquery.tocify.js
docs/articles/bioconductor_files/typedarray-0.1/typedarray.min.js
docs/articles/caprion_dr.js
docs/articles/dag.svg
docs/articles/es.html
docs/articles/es/lod-1.png
docs/articles/es/mcpca-1.png
docs/articles/es/plots-1.png
docs/articles/es/plots-2.png
docs/articles/es/test-1.png
docs/articles/es_files/bootstrap-3.3.5/css/bootstrap-theme.css
docs/articles/es_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
docs/articles/es_files/bootstrap-3.3.5/css/bootstrap-theme.min.css
docs/articles/es_files/bootstrap-3.3.5/css/bootstrap.css
docs/articles/es_files/bootstrap-3.3.5/css/bootstrap.css.map
docs/articles/es_files/bootstrap-3.3.5/css/bootstrap.min.css
docs/articles/es_files/bootstrap-3.3.5/css/cerulean.min.css
docs/articles/es_files/bootstrap-3.3.5/css/cosmo.min.css
docs/articles/es_files/bootstrap-3.3.5/css/darkly.min.css
docs/articles/es_files/bootstrap-3.3.5/css/flatly.min.css
docs/articles/es_files/bootstrap-3.3.5/css/fonts/Lato.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/LatoBold.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/OpenSans.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/Raleway.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/Roboto.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
docs/articles/es_files/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
docs/articles/es_files/bootstrap-3.3.5/css/journal.min.css
docs/articles/es_files/bootstrap-3.3.5/css/lumen.min.css
docs/articles/es_files/bootstrap-3.3.5/css/paper.min.css
docs/articles/es_files/bootstrap-3.3.5/css/readable.min.css
docs/articles/es_files/bootstrap-3.3.5/css/sandstone.min.css
docs/articles/es_files/bootstrap-3.3.5/css/simplex.min.css
docs/articles/es_files/bootstrap-3.3.5/css/spacelab.min.css
docs/articles/es_files/bootstrap-3.3.5/css/united.min.css
docs/articles/es_files/bootstrap-3.3.5/css/yeti.min.css
docs/articles/es_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
docs/articles/es_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
docs/articles/es_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
docs/articles/es_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
docs/articles/es_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
docs/articles/es_files/bootstrap-3.3.5/js/bootstrap.js
docs/articles/es_files/bootstrap-3.3.5/js/bootstrap.min.js
docs/articles/es_files/bootstrap-3.3.5/js/npm.js
docs/articles/es_files/bootstrap-3.3.5/shim/html5shiv.min.js
docs/articles/es_files/bootstrap-3.3.5/shim/respond.min.js
docs/articles/es_files/jquery-3.6.0/jquery-3.6.0.js
docs/articles/es_files/jquery-3.6.0/jquery-3.6.0.min.js
docs/articles/es_files/jquery-3.6.0/jquery-3.6.0.min.map
docs/articles/es_files/jqueryui-1.11.4/README
docs/articles/es_files/jqueryui-1.11.4/images/ui-icons_444444_256x240.png
docs/articles/es_files/jqueryui-1.11.4/images/ui-icons_555555_256x240.png
docs/articles/es_files/jqueryui-1.11.4/images/ui-icons_777620_256x240.png
docs/articles/es_files/jqueryui-1.11.4/images/ui-icons_777777_256x240.png
docs/articles/es_files/jqueryui-1.11.4/images/ui-icons_cc0000_256x240.png
docs/articles/es_files/jqueryui-1.11.4/images/ui-icons_ffffff_256x240.png
docs/articles/es_files/jqueryui-1.11.4/index.html
docs/articles/es_files/jqueryui-1.11.4/jquery-ui.css
docs/articles/es_files/jqueryui-1.11.4/jquery-ui.js
docs/articles/es_files/jqueryui-1.11.4/jquery-ui.min.css
docs/articles/es_files/jqueryui-1.11.4/jquery-ui.min.js
docs/articles/es_files/jqueryui-1.11.4/jquery-ui.structure.css
docs/articles/es_files/jqueryui-1.11.4/jquery-ui.structure.min.css
docs/articles/es_files/jqueryui-1.11.4/jquery-ui.theme.css
docs/articles/es_files/jqueryui-1.11.4/jquery-ui.theme.min.css
docs/articles/es_files/jqueryui-1.13.2/AUTHORS.txt
docs/articles/es_files/jqueryui-1.13.2/LICENSE.txt
docs/articles/es_files/jqueryui-1.13.2/images/ui-icons_444444_256x240.png
docs/articles/es_files/jqueryui-1.13.2/images/ui-icons_555555_256x240.png
docs/articles/es_files/jqueryui-1.13.2/images/ui-icons_777620_256x240.png
docs/articles/es_files/jqueryui-1.13.2/images/ui-icons_777777_256x240.png
docs/articles/es_files/jqueryui-1.13.2/images/ui-icons_cc0000_256x240.png
docs/articles/es_files/jqueryui-1.13.2/images/ui-icons_ffffff_256x240.png
docs/articles/es_files/jqueryui-1.13.2/index.html
docs/articles/es_files/jqueryui-1.13.2/jquery-ui.css
docs/articles/es_files/jqueryui-1.13.2/jquery-ui.js
docs/articles/es_files/jqueryui-1.13.2/jquery-ui.min.css
docs/articles/es_files/jqueryui-1.13.2/jquery-ui.min.js
docs/articles/es_files/jqueryui-1.13.2/jquery-ui.structure.css
docs/articles/es_files/jqueryui-1.13.2/jquery-ui.structure.min.css
docs/articles/es_files/jqueryui-1.13.2/jquery-ui.theme.css
docs/articles/es_files/jqueryui-1.13.2/jquery-ui.theme.min.css
docs/articles/es_files/navigation-1.1/codefolding-lua.css
docs/articles/es_files/navigation-1.1/codefolding.js
docs/articles/es_files/navigation-1.1/sourceembed.js
docs/articles/es_files/navigation-1.1/tabsets.js
docs/articles/es_files/tocify-1.9.1/jquery.tocify.css
docs/articles/es_files/tocify-1.9.1/jquery.tocify.js
docs/articles/fig2d.html
docs/articles/fig3d.html
docs/articles/index.html
docs/articles/karyoplot.png
docs/articles/lz.htm
docs/articles/pQTLtools.html
docs/articles/pQTLtools/GREAT-1.png
docs/articles/pQTLtools/GREAT-2.png
docs/articles/pQTLtools/ctbar-1.png
docs/articles/pQTLtools/ctcircos-1.png
docs/articles/pQTLtools/forest-1.png
docs/articles/pQTLtools/forest-2.png
docs/articles/pQTLtools/forest-3.png
docs/articles/pQTLtools/forest-4.png
docs/articles/pQTLtools/karyoplot-1.png
docs/articles/pQTLtools/mr-1.png
docs/articles/pQTLtools/pQTLs-1.png
docs/articles/pQTLtools/pqtlMR-1.png
docs/articles/pQTLtools/qtl2dplot-1.png
docs/articles/pQTLtools/runTwoSampleMR-1.png
docs/articles/pQTLtools/runTwoSampleMR-2.png
docs/articles/pQTLtools/runTwoSampleMR-3.png
docs/articles/pQTLtools/runTwoSampleMR-4.png
docs/articles/pQTLtools/sh2b3-1.png
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/bootstrap-theme.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/bootstrap-theme.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/bootstrap.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/bootstrap.css.map
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/bootstrap.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/cerulean.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/cosmo.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/darkly.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/flatly.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/Lato.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/LatoBold.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/OpenSans.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/Raleway.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/Roboto.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/journal.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/lumen.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/paper.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/readable.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/sandstone.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/simplex.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/spacelab.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/united.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/css/yeti.min.css
docs/articles/pQTLtools_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
docs/articles/pQTLtools_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
docs/articles/pQTLtools_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
docs/articles/pQTLtools_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
docs/articles/pQTLtools_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
docs/articles/pQTLtools_files/bootstrap-3.3.5/js/bootstrap.js
docs/articles/pQTLtools_files/bootstrap-3.3.5/js/bootstrap.min.js
docs/articles/pQTLtools_files/bootstrap-3.3.5/js/npm.js
docs/articles/pQTLtools_files/bootstrap-3.3.5/shim/html5shiv.min.js
docs/articles/pQTLtools_files/bootstrap-3.3.5/shim/respond.min.js
docs/articles/pQTLtools_files/crosstalk-1.2.0/css/crosstalk.min.css
docs/articles/pQTLtools_files/crosstalk-1.2.0/js/crosstalk.js
docs/articles/pQTLtools_files/crosstalk-1.2.0/js/crosstalk.js.map
docs/articles/pQTLtools_files/crosstalk-1.2.0/js/crosstalk.min.js
docs/articles/pQTLtools_files/crosstalk-1.2.0/js/crosstalk.min.js.map
docs/articles/pQTLtools_files/crosstalk-1.2.0/scss/crosstalk.scss
docs/articles/pQTLtools_files/header-attrs-2.19/header-attrs.js
docs/articles/pQTLtools_files/htmlwidgets-1.6.0/htmlwidgets.js
docs/articles/pQTLtools_files/htmlwidgets-1.6.1/htmlwidgets.js
docs/articles/pQTLtools_files/htmlwidgets-1.6.2/htmlwidgets.js
docs/articles/pQTLtools_files/jquery-3.5.1/jquery-AUTHORS.txt
docs/articles/pQTLtools_files/jquery-3.5.1/jquery.js
docs/articles/pQTLtools_files/jquery-3.5.1/jquery.min.js
docs/articles/pQTLtools_files/jquery-3.5.1/jquery.min.map
docs/articles/pQTLtools_files/jquery-3.6.0/jquery-3.6.0.js
docs/articles/pQTLtools_files/jquery-3.6.0/jquery-3.6.0.min.js
docs/articles/pQTLtools_files/jquery-3.6.0/jquery-3.6.0.min.map
docs/articles/pQTLtools_files/jqueryui-1.11.4/README
docs/articles/pQTLtools_files/jqueryui-1.11.4/images/ui-icons_444444_256x240.png
docs/articles/pQTLtools_files/jqueryui-1.11.4/images/ui-icons_555555_256x240.png
docs/articles/pQTLtools_files/jqueryui-1.11.4/images/ui-icons_777620_256x240.png
docs/articles/pQTLtools_files/jqueryui-1.11.4/images/ui-icons_777777_256x240.png
docs/articles/pQTLtools_files/jqueryui-1.11.4/images/ui-icons_cc0000_256x240.png
docs/articles/pQTLtools_files/jqueryui-1.11.4/images/ui-icons_ffffff_256x240.png
docs/articles/pQTLtools_files/jqueryui-1.11.4/index.html
docs/articles/pQTLtools_files/jqueryui-1.11.4/jquery-ui.css
docs/articles/pQTLtools_files/jqueryui-1.11.4/jquery-ui.js
docs/articles/pQTLtools_files/jqueryui-1.11.4/jquery-ui.min.css
docs/articles/pQTLtools_files/jqueryui-1.11.4/jquery-ui.min.js
docs/articles/pQTLtools_files/jqueryui-1.11.4/jquery-ui.structure.css
docs/articles/pQTLtools_files/jqueryui-1.11.4/jquery-ui.structure.min.css
docs/articles/pQTLtools_files/jqueryui-1.11.4/jquery-ui.theme.css
docs/articles/pQTLtools_files/jqueryui-1.11.4/jquery-ui.theme.min.css
docs/articles/pQTLtools_files/jqueryui-1.13.2/AUTHORS.txt
docs/articles/pQTLtools_files/jqueryui-1.13.2/LICENSE.txt
docs/articles/pQTLtools_files/jqueryui-1.13.2/images/ui-icons_444444_256x240.png
docs/articles/pQTLtools_files/jqueryui-1.13.2/images/ui-icons_555555_256x240.png
docs/articles/pQTLtools_files/jqueryui-1.13.2/images/ui-icons_777620_256x240.png
docs/articles/pQTLtools_files/jqueryui-1.13.2/images/ui-icons_777777_256x240.png
docs/articles/pQTLtools_files/jqueryui-1.13.2/images/ui-icons_cc0000_256x240.png
docs/articles/pQTLtools_files/jqueryui-1.13.2/images/ui-icons_ffffff_256x240.png
docs/articles/pQTLtools_files/jqueryui-1.13.2/index.html
docs/articles/pQTLtools_files/jqueryui-1.13.2/jquery-ui.css
docs/articles/pQTLtools_files/jqueryui-1.13.2/jquery-ui.js
docs/articles/pQTLtools_files/jqueryui-1.13.2/jquery-ui.min.css
docs/articles/pQTLtools_files/jqueryui-1.13.2/jquery-ui.min.js
docs/articles/pQTLtools_files/jqueryui-1.13.2/jquery-ui.structure.css
docs/articles/pQTLtools_files/jqueryui-1.13.2/jquery-ui.structure.min.css
docs/articles/pQTLtools_files/jqueryui-1.13.2/jquery-ui.theme.css
docs/articles/pQTLtools_files/jqueryui-1.13.2/jquery-ui.theme.min.css
docs/articles/pQTLtools_files/navigation-1.1/codefolding-lua.css
docs/articles/pQTLtools_files/navigation-1.1/codefolding.js
docs/articles/pQTLtools_files/navigation-1.1/sourceembed.js
docs/articles/pQTLtools_files/navigation-1.1/tabsets.js
docs/articles/pQTLtools_files/plotly-binding-4.10.1/plotly.js
docs/articles/pQTLtools_files/plotly-binding-4.10.2/plotly.js
docs/articles/pQTLtools_files/plotly-htmlwidgets-css-2.11.1/plotly-htmlwidgets.css
docs/articles/pQTLtools_files/plotly-main-2.11.1/plotly-latest.min.js
docs/articles/pQTLtools_files/tocify-1.9.1/jquery.tocify.css
docs/articles/pQTLtools_files/tocify-1.9.1/jquery.tocify.js
docs/articles/pQTLtools_files/typedarray-0.1/typedarray.min.js
docs/articles/rulegraph.svg
docs/articles/snakemake.html
docs/articles/snakemake_files/bootstrap-3.3.5/css/bootstrap-theme.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/bootstrap-theme.css.map
docs/articles/snakemake_files/bootstrap-3.3.5/css/bootstrap-theme.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/bootstrap.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/bootstrap.css.map
docs/articles/snakemake_files/bootstrap-3.3.5/css/bootstrap.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/cerulean.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/cosmo.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/darkly.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/flatly.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/Lato.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/LatoBold.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/LatoItalic.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/NewsCycle.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/NewsCycleBold.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/OpenSans.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/OpenSansBold.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/OpenSansBoldItalic.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/OpenSansItalic.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/OpenSansLight.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/OpenSansLightItalic.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/Raleway.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/RalewayBold.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/Roboto.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/RobotoBold.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/RobotoLight.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/RobotoMedium.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/SourceSansPro.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/SourceSansProBold.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/SourceSansProItalic.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/SourceSansProLight.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/fonts/Ubuntu.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/css/journal.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/lumen.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/paper.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/readable.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/sandstone.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/simplex.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/spacelab.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/united.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/css/yeti.min.css
docs/articles/snakemake_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.eot
docs/articles/snakemake_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.svg
docs/articles/snakemake_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.ttf
docs/articles/snakemake_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff
docs/articles/snakemake_files/bootstrap-3.3.5/fonts/glyphicons-halflings-regular.woff2
docs/articles/snakemake_files/bootstrap-3.3.5/js/bootstrap.js
docs/articles/snakemake_files/bootstrap-3.3.5/js/bootstrap.min.js
docs/articles/snakemake_files/bootstrap-3.3.5/js/npm.js
docs/articles/snakemake_files/bootstrap-3.3.5/shim/html5shiv.min.js
docs/articles/snakemake_files/bootstrap-3.3.5/shim/respond.min.js
docs/articles/snakemake_files/jquery-3.6.0/jquery-3.6.0.js
docs/articles/snakemake_files/jquery-3.6.0/jquery-3.6.0.min.js
docs/articles/snakemake_files/jquery-3.6.0/jquery-3.6.0.min.map
docs/articles/snakemake_files/jqueryui-1.11.4/README
docs/articles/snakemake_files/jqueryui-1.11.4/images/ui-icons_444444_256x240.png
docs/articles/snakemake_files/jqueryui-1.11.4/images/ui-icons_555555_256x240.png
docs/articles/snakemake_files/jqueryui-1.11.4/images/ui-icons_777620_256x240.png
docs/articles/snakemake_files/jqueryui-1.11.4/images/ui-icons_777777_256x240.png
docs/articles/snakemake_files/jqueryui-1.11.4/images/ui-icons_cc0000_256x240.png
docs/articles/snakemake_files/jqueryui-1.11.4/images/ui-icons_ffffff_256x240.png
docs/articles/snakemake_files/jqueryui-1.11.4/index.html
docs/articles/snakemake_files/jqueryui-1.11.4/jquery-ui.css
docs/articles/snakemake_files/jqueryui-1.11.4/jquery-ui.js
docs/articles/snakemake_files/jqueryui-1.11.4/jquery-ui.min.css
docs/articles/snakemake_files/jqueryui-1.11.4/jquery-ui.min.js
docs/articles/snakemake_files/jqueryui-1.11.4/jquery-ui.structure.css
docs/articles/snakemake_files/jqueryui-1.11.4/jquery-ui.structure.min.css
docs/articles/snakemake_files/jqueryui-1.11.4/jquery-ui.theme.css
docs/articles/snakemake_files/jqueryui-1.11.4/jquery-ui.theme.min.css
docs/articles/snakemake_files/jqueryui-1.13.2/AUTHORS.txt
docs/articles/snakemake_files/jqueryui-1.13.2/LICENSE.txt
docs/articles/snakemake_files/jqueryui-1.13.2/images/ui-icons_444444_256x240.png
docs/articles/snakemake_files/jqueryui-1.13.2/images/ui-icons_555555_256x240.png
docs/articles/snakemake_files/jqueryui-1.13.2/images/ui-icons_777620_256x240.png
docs/articles/snakemake_files/jqueryui-1.13.2/images/ui-icons_777777_256x240.png
docs/articles/snakemake_files/jqueryui-1.13.2/images/ui-icons_cc0000_256x240.png
docs/articles/snakemake_files/jqueryui-1.13.2/images/ui-icons_ffffff_256x240.png
docs/articles/snakemake_files/jqueryui-1.13.2/index.html
docs/articles/snakemake_files/jqueryui-1.13.2/jquery-ui.css
docs/articles/snakemake_files/jqueryui-1.13.2/jquery-ui.js
docs/articles/snakemake_files/jqueryui-1.13.2/jquery-ui.min.css
docs/articles/snakemake_files/jqueryui-1.13.2/jquery-ui.min.js
docs/articles/snakemake_files/jqueryui-1.13.2/jquery-ui.structure.css
docs/articles/snakemake_files/jqueryui-1.13.2/jquery-ui.structure.min.css
docs/articles/snakemake_files/jqueryui-1.13.2/jquery-ui.theme.css
docs/articles/snakemake_files/jqueryui-1.13.2/jquery-ui.theme.min.css
docs/articles/snakemake_files/navigation-1.1/codefolding-lua.css
docs/articles/snakemake_files/navigation-1.1/codefolding.js
docs/articles/snakemake_files/navigation-1.1/sourceembed.js
docs/articles/snakemake_files/navigation-1.1/tabsets.js
docs/articles/snakemake_files/tocify-1.9.1/jquery.tocify.css
docs/articles/snakemake_files/tocify-1.9.1/jquery.tocify.js
docs/authors.html
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js
docs/deps/bootstrap-5.2.2/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.2.2/bootstrap.min.css
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js
docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map
docs/deps/bootstrap-5.3.1/bootstrap.min.css
docs/deps/data-deps.txt
docs/deps/jquery-3.6.0/jquery-3.6.0.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.js
docs/deps/jquery-3.6.0/jquery-3.6.0.min.map
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.svg
docs/news/index.html
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/Rplot003.png
docs/reference/Rplot004.png
docs/reference/Rplot005.png
docs/reference/Rplot006.png
docs/reference/Rplot007.png
docs/reference/Rplot008.png
docs/reference/Rplot009.png
docs/reference/Rplot010.png
docs/reference/Rplot011.png
docs/reference/Rplot012.png
docs/reference/Rplot013.png
docs/reference/Rplot014.png
docs/reference/Rplot015.png
docs/reference/Rplot016.png
docs/reference/Rplot017.png
docs/reference/Rplot018.png
docs/reference/Rplot019.png
docs/reference/Rplot020.png
docs/reference/Rplot021.png
docs/reference/Rplot022.png
docs/reference/Rplot023.png
docs/reference/Rplot024.png
docs/reference/Rplot025.png
docs/reference/Rplot026.png
docs/reference/blank_plot.html
docs/reference/clump_data.args.html
docs/reference/extract_outcome_data.args.html
docs/reference/figures/ceu.svg
docs/reference/figures/logo.svg
docs/reference/format_data.args.html
docs/reference/genequeries.html
docs/reference/get.prop.below.LLOD-1.png
docs/reference/get.prop.below.LLOD.html
docs/reference/harmonise_data.args.html
docs/reference/import_OpenGWAS.html
docs/reference/import_eQTLCatalogue.html
docs/reference/index.html
docs/reference/make_ExpressionSet-1.png
docs/reference/make_ExpressionSet-10.png
docs/reference/make_ExpressionSet-11.png
docs/reference/make_ExpressionSet-12.png
docs/reference/make_ExpressionSet-13.png
docs/reference/make_ExpressionSet-14.png
docs/reference/make_ExpressionSet-15.png
docs/reference/make_ExpressionSet-16.png
docs/reference/make_ExpressionSet-17.png
docs/reference/make_ExpressionSet-18.png
docs/reference/make_ExpressionSet-19.png
docs/reference/make_ExpressionSet-2.png
docs/reference/make_ExpressionSet-20.png
docs/reference/make_ExpressionSet-21.png
docs/reference/make_ExpressionSet-22.png
docs/reference/make_ExpressionSet-23.png
docs/reference/make_ExpressionSet-24.png
docs/reference/make_ExpressionSet-25.png
docs/reference/make_ExpressionSet-26.png
docs/reference/make_ExpressionSet-3.png
docs/reference/make_ExpressionSet-4.png
docs/reference/make_ExpressionSet-5.png
docs/reference/make_ExpressionSet-6.png
docs/reference/make_ExpressionSet-7.png
docs/reference/make_ExpressionSet-8.png
docs/reference/make_ExpressionSet-9.png
docs/reference/make_ExpressionSet.html
docs/reference/mr_forest_plot2.html
docs/reference/mr_funnel_plot2.html
docs/reference/mr_leaveoneout_plot2.html
docs/reference/mr_scatter_plot2.html
docs/reference/novelty_check.html
docs/reference/pQTLtools-package.html
docs/reference/pQTLtools.html
docs/reference/peptideAssociationPlot.html
docs/reference/peptideMapping.html
docs/reference/pqtlMR.html
docs/reference/qtl_lookup.html
docs/reference/regionqueries.html
docs/reference/run_TwoSampleMR-1.png
docs/reference/run_TwoSampleMR-2.png
docs/reference/run_TwoSampleMR-3.png
docs/reference/run_TwoSampleMR-4.png
docs/reference/run_TwoSampleMR.html
docs/reference/run_coloc.html
docs/reference/snpqueries.html
docs/reference/swap.html
docs/reference/turboman.html
docs/reference/turboqq.html
docs/reference/uniprot2ids.html
docs/search.json
docs/sitemap.xml
inst/Bioconductor/Pi.R
inst/Bioconductor/figures/Pi.gene_manhattan.png
inst/Bioconductor/figures/Pi.network_vis.png
inst/Bioconductor/figures/Pi.pathway_barplot.png
inst/Bioconductor/maEndtoEnd.R inst/PPI/README.md inst/README.md
inst/REFERENCES.bib
inst/STRING/change_STRING_colors.py
inst/UniProt/README.md
inst/UniProt/accession.py
inst/UniProt/gene.py
inst/UniProt/uniprot2ids.py
inst/csd3.sh
inst/docs.sh
inst/eQTL-Catalogue/column_names.Alasoo
inst/eQTL-Catalogue/column_names.CEDAR
inst/eQTL-Catalogue/column_names.GTEx
inst/eQTL-Catalogue/hg19ToHg38.over.chain
inst/eQTL-Catalogue/tabix_ftp_paths.tsv
inst/eQTL-Catalogue/tabix_ftp_paths_ge.tsv
inst/eQTL-Catalogue/tabix_ftp_paths_gtex.tsv
inst/snakemake/LICENSE
inst/snakemake/config.yaml
inst/snakemake/input/MR.csv
inst/snakemake/input/Obs_HF.csv
inst/snakemake/input/Obs_HF2.csv
inst/snakemake/input/ld/CD40.ld
inst/snakemake/input/ld/CD40.snplist
inst/snakemake/input/ld/OPG.ld
inst/snakemake/input/ld/OPG.snplist
inst/snakemake/workflow/Snakefile
inst/snakemake/workflow/envs/conda.yaml
inst/snakemake/workflow/r/MR_analysis.R inst/snakemake/workflow/r/MR_functions.R inst/snakemake/workflow/r/Obs_analysis.R
inst/snakemake/workflow/report/workflow.rst
inst/suggests.R
inst/tests/IL.12B.txt
inst/tests/INF1.METAL
inst/tests/INF1.merge
inst/tests/Ins.csv
inst/tests/MMP.10-cis.mrx
inst/tests/Out.csv
inst/tests/README.md
inst/tests/annot.RDS
inst/tests/efo.txt
inst/tests/hgnc.rda
inst/tests/inf1.tmp
inst/tests/novel_data.rda
inst/tests/pQTL_genes.txt
inst/turboman/README.Rmd inst/turboman/README.md
inst/turboman/turboman_hg19_reference_data.rda
inst/turboman/turboman_hg38_reference_data.rda
man/blank_plot.Rd man/clump_data.args.Rd man/extract_outcome_data.args.Rd
man/figures/ceu.svg
man/figures/logo.svg
man/format_data.args.Rd man/genequeries.Rd man/get.prop.below.LLOD.Rd man/harmonise_data.args.Rd man/import_OpenGWAS.Rd man/import_eQTLCatalogue.Rd man/make_ExpressionSet.Rd man/mr_forest_plot2.Rd man/mr_funnel_plot2.Rd man/mr_leaveoneout_plot2.Rd man/mr_scatter_plot2.Rd man/novelty_check.Rd man/pQTLtools.Rd man/peptideAssociationPlot.Rd man/peptideMapping.Rd man/pqtlMR.Rd man/qtl_lookup.Rd man/regionqueries.Rd man/run_TwoSampleMR.Rd man/run_coloc.Rd man/snpqueries.Rd man/swap.Rd man/turboman.Rd man/turboqq.Rd man/uniprot2ids.Rd
pkgdown/_pkgdown.yml
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
vignettes/LocusZoom.js.Rmd vignettes/SCALLOP-INF.Rmd
vignettes/SF-pQTL-GWAS.png
vignettes/bioconductor.Rmd
vignettes/caprion_dr.js
vignettes/dag.svg
vignettes/es.Rmd
vignettes/lz.htm
vignettes/nature-genetics.csl
vignettes/pQTLtools.Rmd
vignettes/rulegraph.svg
vignettes/snakemake.Rmd
jinghuazhao/pQTLtools documentation built on May 3, 2024, 2:05 p.m.