jinghuazhao/pQTLtools: A Protein Quantitative Trait Locus Toolkit

It seeds collection of data and utilities for pQTL analysis. At this early stage, the repository contains 1. Articles linking functions for cis/trans classification, pQTL-gene plot, 2d/3d-plotly plots, forest plots among others available from gap, <https://github.com/jinghuazhao/R/tree/master/gap>; 2. Query on genes, regions, and SNPs via PhenoScanner, <http://www.phenoscanner.medschl.cam.ac.uk/>, adding functionality to check for replication across platforms; 3. Downstream analysis such as colocalization, pQTL-Mendelian Randomization via TwoSampleMR, <https://github.com/MRCIEU/TwoSampleMR>, linkage through UniProt IDs to other resources; 4. Bioconductor notes and a showcase of snakemake workflow.

Getting started

Package details

Maintainer
LicenseMIT + file LICENSE
Version0.2
URL https://github.com/jinghuazhao/pQTLtools
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("jinghuazhao/pQTLtools")
jinghuazhao/pQTLtools documentation built on Feb. 2, 2024, 8:09 a.m.