format_data.args: FUNCTION_TITLE
In jinghuazhao/pQTLtools: A Protein Quantitative Trait Locus Toolkit

format_data.args

R Documentation

FUNCTION_TITLE

Description

FUNCTION_DESCRIPTION

Usage

format_data.args(
  dat = NULL,
  type = "exposure",
  snps = NULL,
  header = TRUE,
  phenotype_col = "Phenotype",
  snp_col = "SNP",
  beta_col = "beta",
  se_col = "se",
  eaf_col = "eaf",
  effect_allele_col = "effect_allele",
  other_allele_col = "other_allele",
  pval_col = "pval",
  units_col = "units",
  ncase_col = "ncase",
  ncontrol_col = "ncontrol",
  samplesize_col = "samplesize",
  gene_col = "gene",
  id_col = "id",
  min_pval = 1e-200,
  z_col = "z",
  info_col = "info",
  chr_col = "chr",
  pos_col = "pos",
  log_pval = FALSE
)

Arguments

`dat`	PARAM_DESCRIPTION, Default: NULL
`type`	PARAM_DESCRIPTION, Default: 'exposure'
`snps`	PARAM_DESCRIPTION, Default: NULL
`header`	PARAM_DESCRIPTION, Default: TRUE
`phenotype_col`	PARAM_DESCRIPTION, Default: 'Phenotype'
`snp_col`	PARAM_DESCRIPTION, Default: 'SNP'
`beta_col`	PARAM_DESCRIPTION, Default: 'beta'
`se_col`	PARAM_DESCRIPTION, Default: 'se'
`eaf_col`	PARAM_DESCRIPTION, Default: 'eaf'
`effect_allele_col`	PARAM_DESCRIPTION, Default: 'effect_allele'
`other_allele_col`	PARAM_DESCRIPTION, Default: 'other_allele'
`pval_col`	PARAM_DESCRIPTION, Default: 'pval'
`units_col`	PARAM_DESCRIPTION, Default: 'units'
`ncase_col`	PARAM_DESCRIPTION, Default: 'ncase'
`ncontrol_col`	PARAM_DESCRIPTION, Default: 'ncontrol'
`samplesize_col`	PARAM_DESCRIPTION, Default: 'samplesize'
`gene_col`	PARAM_DESCRIPTION, Default: 'gene'
`id_col`	PARAM_DESCRIPTION, Default: 'id'
`min_pval`	PARAM_DESCRIPTION, Default: 1e-200
`z_col`	PARAM_DESCRIPTION, Default: 'z'
`info_col`	PARAM_DESCRIPTION, Default: 'info'
`chr_col`	PARAM_DESCRIPTION, Default: 'chr'
`pos_col`	PARAM_DESCRIPTION, Default: 'pos'
`log_pval`	PARAM_DESCRIPTION, Default: FALSE