Man pages for jinghuazhao/pQTLtools
A Protein Quantitative Trait Locus Toolkit
| blank_plot | FUNCTION_TITLE |
| clump_data.args | FUNCTION_TITLE |
| csq | Variant consequence |
| extract_outcome_data.args | FUNCTION_TITLE |
| format_data.args | FUNCTION_TITLE |
| genequeries | phenoscanner genequeries in batches |
| get.prop.below.LLOD | Limit of detection analysis |
| harmonise_data.args | FUNCTION_TITLE |
| import_eQTLCatalogue | Import eQTL Catalogue |
| import_OpenGWAS | Import OpenGWAS |
| make_ExpressionSet | A call to expressionSet class |
| mr_forest_plot2 | MR forest plot |
| mr_funnel_plot2 | MR funnel plot |
| mr_leaveoneout_plot2 | MR leave-one-out analysis |
| mr_scatter_plot2 | MR scatter plot |
| novelty_check | Locus novelty check |
| peptideAssociationPlot | peptide association plot |
| peptideMapping | peptide-to-protein mapping |
| pqtlMR | Basic pQTL-MR analysis |
| pQTLtools | A reference manual |
| protein_altering_variants | Protein-altering variants |
| qtl_lookup | QTL lookup |
| regionqueries | phenoscanner regionqueries in batches |
| run_coloc | Colocalisation analysis |
| run_TwoSampleMR | Basic TwoSampleMR analysis |
| snpqueries | phenoscanner snpqueries in batches |
| swap | FUNCTION_TITLE |
| turboman | Manhattan plots |
| turboqq | QQ plots |
| uniprot2ids | UniProt IDs to others |
