API for jkbest2/spatq
Use spatially varying catchability to standardize fishery-dependent data
| Global functions | |
|---|---|
| all_res_file_paths | Man page Source code |
| attach_optdiags | Man page Source code |
| bias_metric | Man page Source code |
| build_expr_str | Man page Source code |
| create_index_df | Man page Source code |
| create_res_dir | Man page Source code |
| dim_or_len | Man page Source code |
| domain_boundary | Man page Source code |
| em_estd | Man page Source code |
| em_estd.character | Source code |
| em_estd.default | Source code |
| em_estd.spatq_spec | Source code |
| em_subsample | Man page Source code |
| em_subsample.NULL | Source code |
| em_subsample.character | Source code |
| em_subsample.data.frame | Source code |
| em_subsample.default | Source code |
| field_image | Man page Source code |
| fit_spatq | Man page Source code |
| fit_spatq.spatq_designobj | Source code |
| fit_spatq.spatq_obj | Source code |
| fix_nlminb_fit | Man page Source code |
| fixpar_corr | Man page Source code |
| fixpar_corrplot | Man page Source code |
| fixpar_covcond | Man page Source code |
| fixpar_grad | Man page Source code |
| fixpar_highcorr | Man page Source code |
| fixpar_mgc | Man page Source code |
| fixpar_nulleigs | Man page Source code |
| fixpar_sd | Man page Source code |
| gather_nvec | Man page Source code |
| generate_aniso_fem | Man page Source code |
| generate_empty_projection | Man page Source code |
| generate_fem | Man page Source code |
| generate_mesh | Man page Source code |
| generate_projection | Man page Source code |
| get_coordref | Man page Source code |
| get_index_filetype | Man page Source code |
| get_newpars | Man page Source code |
| get_newpars.NULL | Source code |
| get_newpars.list | Source code |
| get_newpars.numeric | Source code |
| get_newpars.sdreport | Source code |
| get_newpars.spatq_fit | Source code |
| get_newpars.spatq_obj | Source code |
| hessian_spatq | Man page Source code |
| index_path | Man page Source code |
| index_path.list | Source code |
| index_path.spatq_simstudyspec | Source code |
| init_fixef | Man page Source code |
| init_spatq_fit | Man page Source code |
| interleave_estgen | Man page Source code |
| is_estd_hpar | Man page Source code |
| is_estd_proc | Man page Source code |
| isest | Man page Source code |
| isest<- | Man page |
| isgen | Man page Source code |
| isgen<- | Man page |
| jointprec_nulleigs | Man page Source code |
| layout_1mat | Man page Source code |
| layout_indoffset | Man page Source code |
| layout_mat | Man page Source code |
| layout_pop | Source code |
| layout_widths | Man page Source code |
| loc_grid | Man page Source code |
| make_sim_adfun | Man page Source code |
| map_correlation | Man page Source code |
| mgc | Man page Source code |
| mgc.spatq_fit | Source code |
| mgc.spatq_result | Source code |
| new_spatq_setup | Man page Source code |
| new_spatq_simstudyspec | Man page Source code |
| nulleigs | Man page Source code |
| par_expr | Man page Source code |
| par_expr_parts | Man page Source code |
| pars_data | Man page Source code |
| pars_kappa | Man page Source code |
| pars_rho | Man page Source code |
| pars_sig | Man page Source code |
| pars_tau | Man page Source code |
| parse_coords | Man page Source code |
| plot_colorbar | Man page Source code |
| plot_corcolorbar | Man page Source code |
| plot_field | Man page Source code |
| plot_popstate | Man page Source code |
| posdefhess | Man page Source code |
| posdefhess.spatq_result | Source code |
| posdefhess.spatq_simstudyspec | Source code |
| prepare_adfun | Man page Source code |
| prepare_data | Man page Source code |
| prepare_map | Man page Source code |
| prepare_pars | Man page Source code |
| prepare_proc_switch | Man page Source code |
| prepare_random | Man page Source code |
| print.spatq_fit | Source code |
| print.spatq_simstudyspec | Source code |
| proc_colormap | Man page Source code |
| project_field | Man page Source code |
| rdata_path | Man page Source code |
| rdata_path.list | Source code |
| rdata_path.spatq_simstudyspec | Source code |
| re_par_idx | Man page Source code |
| read_all_indices | Man page Source code |
| read_catch | Man page Source code |
| read_catchability | Man page Source code |
| read_estpop | Man page Source code |
| read_estpop.spatq_result | Source code |
| read_estpop.spatq_simstudyspec | Source code |
| read_index | Man page Source code |
| read_index.character | Source code |
| read_index.list | Source code |
| read_index.spatq_simstudyspec | Source code |
| read_index_csv | Man page Source code |
| read_popstate | Man page Source code |
| read_rdata | Man page Source code |
| read_rdata.character | Source code |
| read_rdata.list | Source code |
| read_rdata.spatq_simstudyspec | Source code |
| repl_dir | Man page Source code |
| report_spatq | Man page Source code |
| report_spatq.spatq_designobj | Source code |
| report_spatq.spatq_obj | Source code |
| res_file_names | Man page Source code |
| res_file_paths | Man page Source code |
| rescale_index | Man page Source code |
| rmse_metric | Man page Source code |
| save_fit | Man page Source code |
| save_index | Man page Source code |
| sdreport_spatq | Man page Source code |
| sdreport_spatq.spatq_designobj | Source code |
| sdreport_spatq.spatq_obj | Source code |
| set_string | Man page Source code |
| sim_file_names | Man page Source code |
| sim_file_paths | Man page Source code |
| spat_par_idx | Man page Source code |
| spatq | Man page |
| spatq_fit | Man page Source code |
| spatq_obj | Man page Source code |
| spatq_obj.spatq_designsetup | Source code |
| spatq_obj.spatq_setup | Source code |
| spatq_optcontrol | Man page Source code |
| spatq_result | Source code |
| spatq_setup | Man page Source code |
| spatq_simsetup | Man page Source code |
| spatq_simstudyspec | Man page Source code |
| spatq_simstudyspec.character | Source code |
| spatq_simstudyspec.data.frame | Source code |
| spatq_simstudyspec.list | Source code |
| specify_estimated | Man page Source code |
| study_dir | Man page Source code |
| study_file_base | Man page Source code |
| subsample_catch | Man page Source code |
| terminate_opt | Man page Source code |
| true_percentile | Man page Source code |
| update_map | Man page Source code |
| update_onepar | Man page Source code |
| update_parameters | Man page Source code |
| update_random | Man page Source code |
| update_setup | Man page Source code |
| verify_ident_fixef | Man page Source code |
| verify_setequal | Man page Source code |
| verify_spatq | Man page Source code |
| verify_spatq_dims | Man page Source code |
| verify_spatq_map | Man page Source code |
| verify_spatq_names | Man page Source code |
