Description Usage Arguments Details Value Author(s)
Calculate the PCA with pyramid edges
1 |
df |
Data frame of k-mer freuencies. The single k-mers are the columns and the rows indicating different samples, sequence reads, or contigs. |
Calculate the PCA with pyramid edges
A list containing the following elements:
Data frame of the first three principle components from the PCA representing the frequencies of the k-mers
Data frame of the first three principle components from the PCA representing the edges of the 3D pyramid
Jochen Kruppa
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