get_pca_plot_list: Calculate the PCA with pyramid edges

Description Usage Arguments Details Value Author(s)

Description

Calculate the PCA with pyramid edges

Usage

1

Arguments

df

Data frame of k-mer freuencies. The single k-mers are the columns and the rows indicating different samples, sequence reads, or contigs.

Details

Calculate the PCA with pyramid edges

Value

A list containing the following elements:

pca_plot_df

Data frame of the first three principle components from the PCA representing the frequencies of the k-mers

pca_edge_df

Data frame of the first three principle components from the PCA representing the edges of the 3D pyramid

Author(s)

Jochen Kruppa


jkruppa/kmerPyramid documentation built on May 19, 2019, 12:45 p.m.