ExploreClusterResolutions: Visualise clustering parameters

In jleechung/schelpers: Helper functions for single cell RNA-seq analyses with Seurat

Description

Visualise clustering parameters

Usage

ExploreClusterResolutions(
  seu,
  out.dir = "plots",
  umap.pt = 2,
  tsne.pt = 2,
  dotplot.cex = 10,
  n.markers = 10,
  comb.width = 20,
  comb.height = 16,
  umap.width = 15,
  umap.height = 15,
  tsne.width = 15,
  tsne.height = 15
)

Arguments

seu	seurat object
out.dir	out directory
umap.pt	umap point size
tsne.pt	tsne point size
dotplot.cex	dotplot axis text size
n.markers	number of markers
comb.width	combined plot width
comb.height	combined plot height
umap.width	umap plot width
umap.height	umap plot height
tsne.width	tsne plot width
tsne.height	tsne plot height

Value

list of umaps, tsnes and markers, along with plots in out.dir

jleechung/schelpers documentation built on Dec. 21, 2021, 1:07 a.m.