condByIdent: Compare conditions for each identity class

In jleechung/schelpers: Helper functions for single cell RNA-seq analyses with Seurat

Description

Compare conditions for each identity class

Usage

CondByIdent(
  seu,
  condition = "SHAM.MI",
  xlsx.out.dir = "out",
  xlsx.out.name = "condition-by-ident",
  plot.out.dir = "plots",
  plot.name = "condition-by-ident",
  plot.height = 12,
  plot.width = 16,
  dotplot.cex = 10
)

Arguments

seu	Seurat Object
condition	(metadata column which contains levels of conditions
xlsx.out.dir	marker table dir
xlsx.out.name	marker table name
plot.out.dir	plot dir
plot.name	plot name
plot.height	plot height
plot.width	plot width
dotplot.cex	dotplot axis text size

Value

plots and table of markers

jleechung/schelpers documentation built on Dec. 21, 2021, 1:07 a.m.