API for jma1991/Daim
Analysis, interpretation, and visualization of DamID-seq data
| Global functions | |
|---|---|
| Daim | Man page Source code |
| annotatePeaks | Man page Source code |
| annotatePeaks.nearestTSS | Source code |
| annotatePeaks.overlapRef | Source code |
| callPeaks | Man page Source code |
| callPeaks.RangedSummarizedExperiment | Source code |
| centerMotif | Man page Source code |
| centerMotif.GRanges | Source code |
| computeInput | Man page Source code |
| computeInput.RangedSummarizedExperiment | Source code |
| daimTreat | Man page Source code |
| digestGenome | Man page Source code |
| digestGenome.BSgenome | Source code |
| digestGenome.DNAStringSet | Source code |
| digestGenome.FaFile | Source code |
| filterBySize | Man page Source code |
| filterBySize.GRanges | Source code |
| fragmentCounts | Man page Source code |
| fragmentCounts.flank | Source code |
| fragmentCounts.inner | Source code |
| genomeInfo | Man page |
| normalizeBias | Man page Source code |
| normalizeBias.RangedSummarizedExperiment | Source code |
| plotComplexity | Man page Source code |
| plotComplexity.RangedSummarizedExperiment | Source code |
| plotCorrelation | Man page Source code |
| plotCorrelation.RangedSummarizedExperiment | Source code |
| plotCoverage | Man page Source code |
| plotCoverage.RangedSummarizedExperiment | Source code |
| plotDensity | Man page Source code |
| plotDensity.RangedSummarizedExperiment | Source code |
| plotEnrichment | Man page Source code |
| plotEnrichment.RangedSummarizedExperiment | Source code |
| plotFeature | Man page Source code |
| plotMA | Man page Source code |
| plotMA.RangedSummarizedExperiment | Source code |
| plotMDS | Man page Source code |
| plotMDS.RangedSummarizedExperiment | Source code |
| plotMDS.matrix | Source code |
| plotPCA | Man page Source code |
| plotPCA.RangedSummarizedExperiment | Source code |
| plotPCA.matrix | Source code |
| plotTSS | Man page Source code |
| plotTSS.absolute | Source code |
| plotTSS.relative | Source code |
| rollAssay | Man page Source code |
| searchMotif | Man page Source code |
| searchMotif.BSgenome | Source code |
| writeAssay | Man page Source code |
| writeAssay.counts | Source code |
| writeAssay.qsmooth | Source code |
| writeBroad | Man page Source code |
| writeBroad.GRanges | Source code |
| writeRatio | Man page Source code |
| writeRatio.RangedSummarizedExperiment | Source code |
