fragmentCounts: Count reads in restriction fragments

Description Usage Arguments Value

View source: R/fragmentCounts.R

Description

Assign mapped sequencing reads to restriction fragments.

Usage

1
fragmentCounts(reads, fragments, mode = c("inner", "flank"))

Arguments

reads

A character vector of paths to BAM files.

fragments

A GRanges object of restriction fragments.

mode

Read counting mode. Can be either "inner" or "flank".

Value

A RangedSummarizedExperiment object.


jma1991/Daim documentation built on Oct. 4, 2020, 2:21 a.m.