callPeaks: Call peaks from DamID-seq data

In jma1991/Daim: Analysis, interpretation, and visualization of DamID-seq data

Description

Test each restriction fragment for differential methylation and combine into peak regions.

Usage

callPeaks(object, alpha = 0.05, lfc = 0)

Arguments

object	A RangedSummarizedExperiment object containing normalised counts.
alpha	Threshold adjusted P value for declaring whether a peak is statistically significant.
lfc	A non-negative value which specifies a log2 fold change threshold.

Value

A GRanges object of peak regions.

jma1991/Daim documentation built on Oct. 4, 2020, 2:21 a.m.