Files in jma1991/Daim

Analysis, interpretation, and visualization of DamID-seq data

.Rbuildignore

.gitignore

.travis.yml

CODE_OF_CONDUCT.md

DESCRIPTION

Daim.Rproj

LICENSE

NAMESPACE

NEWS.md R/Daim.R R/annotatePeaks.R R/callPeaks.R R/centerMotif.R R/computeInput.R R/daimTreat.R R/digestGenome.R R/filterBySize.R R/fragmentCounts.R R/normalizeBias.R R/plotComplexity.R R/plotCorrelation.R R/plotCoverage.R R/plotDensity.R R/plotEnrichment.R R/plotFeature.R R/plotMA.R R/plotMDS.R R/plotPCA.R R/plotTSS.R R/rollAssay.R R/searchMotif.R

R/sysdata.rda

R/writeAssay.R R/writeBroad.R R/writeRatio.R README.md

_config.yml

man/Daim.Rd man/annotatePeaks.Rd man/callPeaks.Rd man/centerMotif.Rd man/computeInput.Rd man/daimTreat.Rd man/digestGenome.Rd man/filterBySize.Rd man/fragmentCounts.Rd man/genomeInfo.Rd man/normalizeBias.Rd man/plotComplexity.Rd man/plotCorrelation.Rd man/plotCoverage.Rd man/plotDensity.Rd man/plotEnrichment.Rd man/plotFeature.Rd man/plotMA.Rd man/plotMDS.Rd man/plotPCA.Rd man/plotTSS.Rd man/rollAssay.Rd man/searchMotif.Rd man/writeAssay.Rd man/writeBroad.Rd man/writeRatio.Rd

vignettes/.gitignore

vignettes/Daim.Rmd

vignettes/bindSite.png

vignettes/openSite.png

vignettes/plotComplexity.png

vignettes/plotCorrelation.png

vignettes/plotCoverage.png

vignettes/plotDensity.png

vignettes/plotEnrichment.png

vignettes/plotFeature.png

vignettes/plotMA.png

vignettes/plotMDS.png

vignettes/plotPCA.png

vignettes/plotTSS-abs.png

vignettes/plotTSS-rel.png

vignettes/vignette.R

vignettes/writeAssay.png

jma1991/Daim documentation built on Oct. 4, 2020, 2:21 a.m.