jmacdon/AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor

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Files in jmacdon/AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor

DESCRIPTION
NAMESPACE
NEWS
R/00RTobjs.R R/AllClasses.R R/AllGenerics.R R/AnnDbObj-lowAPI.R R/AnnDbPkg-checker.R R/AnnDbPkg-templates-common.R R/Bimap-envirAPI.R R/Bimap.R R/BimapFormatting.R R/FlatBimap.R R/GOTerms.R R/SQL.R R/createAnnObjs-utils.R R/createAnnObjs.ARABIDOPSISCHIP_DB.R R/createAnnObjs.ARABIDOPSIS_DB.R R/createAnnObjs.COELICOLOR_DB.R R/createAnnObjs.GO_DB.R R/createAnnObjs.KEGG_DB.R R/createAnnObjs.MALARIA_DB.R R/createAnnObjs.NCBICHIP_DBs.R R/createAnnObjs.NCBIORG_DBs.R R/createAnnObjs.ORGANISM_DB.R R/createAnnObjs.PFAM_DB.R R/createAnnObjs.YEASTCHIP_DB.R R/createAnnObjs.YEASTNCBI_DB.R R/createAnnObjs.YEAST_DB.R R/flatten.R R/inpIDMapper.R R/loadDb.R R/makeMap.R R/methods-AnnotationDb.R R/methods-OrthologyDb.R R/methods-ReactomeDb.R R/methods-SQLiteConnection.R R/methods-geneCentricDbs-keys.R R/methods-geneCentricDbs.R R/print.probetable.R R/test_AnnotationDbi_package.R R/unlist2.R R/utils.R README.md
inst/DBschemas/SchemaGuidelines.txt
inst/DBschemas/schemas_0.9/00README.TXT
inst/DBschemas/schemas_0.9/ARABIDOPSISCHIP_DB.sql
inst/DBschemas/schemas_0.9/DataTypes.txt
inst/DBschemas/schemas_0.9/FLYCHIP_DB.sql
inst/DBschemas/schemas_0.9/FLY_DB.sql
inst/DBschemas/schemas_0.9/GO_DB.sql
inst/DBschemas/schemas_0.9/HUMANCHIP_DB.sql
inst/DBschemas/schemas_0.9/HUMAN_DB.sql
inst/DBschemas/schemas_0.9/KEGG_DB.sql
inst/DBschemas/schemas_0.9/RODENTCHIP_DB.sql
inst/DBschemas/schemas_0.9/RODENT_DB.sql
inst/DBschemas/schemas_0.9/YEASTCHIP_DB.sql
inst/DBschemas/schemas_0.9/YEAST_DB.sql
inst/DBschemas/schemas_1.0/00README.TXT
inst/DBschemas/schemas_1.0/ARABIDOPSISCHIP_DB.sql
inst/DBschemas/schemas_1.0/BOVINECHIP_DB.sql
inst/DBschemas/schemas_1.0/BOVINE_DB.sql
inst/DBschemas/schemas_1.0/CANINECHIP_DB.sql
inst/DBschemas/schemas_1.0/CANINE_DB.sql
inst/DBschemas/schemas_1.0/CHICKENCHIP_DB.sql
inst/DBschemas/schemas_1.0/CHICKEN_DB.sql
inst/DBschemas/schemas_1.0/DataTypes.txt
inst/DBschemas/schemas_1.0/ECOLICHIP_DB.sql
inst/DBschemas/schemas_1.0/ECOLI_DB.sql
inst/DBschemas/schemas_1.0/FLYCHIP_DB.sql
inst/DBschemas/schemas_1.0/FLY_DB.sql
inst/DBschemas/schemas_1.0/GO_DB.sql
inst/DBschemas/schemas_1.0/HUMANCHIP_DB.sql
inst/DBschemas/schemas_1.0/HUMANCROSSCHIP_DB.sql
inst/DBschemas/schemas_1.0/HUMAN_DB.sql
inst/DBschemas/schemas_1.0/INPARANOIDDROME_DB.sql
inst/DBschemas/schemas_1.0/INPARANOIDHOMSA_DB.sql
inst/DBschemas/schemas_1.0/INPARANOIDMUSMU_DB.sql
inst/DBschemas/schemas_1.0/INPARANOIDRATNO_DB.sql
inst/DBschemas/schemas_1.0/INPARANOIDSACCE_DB.sql
inst/DBschemas/schemas_1.0/KEGG_DB.sql
inst/DBschemas/schemas_1.0/MALARIA_DB.sql
inst/DBschemas/schemas_1.0/MOUSECHIP_DB.sql
inst/DBschemas/schemas_1.0/MOUSE_DB.sql
inst/DBschemas/schemas_1.0/PFAM_DB.sql
inst/DBschemas/schemas_1.0/PIGCHIP_DB.sql
inst/DBschemas/schemas_1.0/PIG_DB.sql
inst/DBschemas/schemas_1.0/RATCHIP_DB.sql
inst/DBschemas/schemas_1.0/RAT_DB.sql
inst/DBschemas/schemas_1.0/WORMCHIP_DB.sql
inst/DBschemas/schemas_1.0/WORM_DB.sql
inst/DBschemas/schemas_1.0/YEASTCHIP_DB.sql
inst/DBschemas/schemas_1.0/YEAST_DB.sql
inst/DBschemas/schemas_1.0/ZEBRAFISHCHIP_DB.sql
inst/DBschemas/schemas_1.0/ZEBRAFISH_DB.sql
inst/DBschemas/schemas_2.0/00README.TXT
inst/DBschemas/schemas_2.0/ANOPHELES_DB.sql
inst/DBschemas/schemas_2.0/ARABIDOPSISCHIP_DB.sql
inst/DBschemas/schemas_2.0/ARABIDOPSIS_DB.sql
inst/DBschemas/schemas_2.0/BOVINECHIP_DB.sql
inst/DBschemas/schemas_2.0/BOVINE_DB.sql
inst/DBschemas/schemas_2.0/CANINECHIP_DB.sql
inst/DBschemas/schemas_2.0/CANINE_DB.sql
inst/DBschemas/schemas_2.0/CHICKENCHIP_DB.sql
inst/DBschemas/schemas_2.0/CHICKEN_DB.sql
inst/DBschemas/schemas_2.0/CHIMP_DB.sql
inst/DBschemas/schemas_2.0/DataTypes.txt
inst/DBschemas/schemas_2.0/ECOLI_DB.sql
inst/DBschemas/schemas_2.0/FLYCHIP_DB.sql
inst/DBschemas/schemas_2.0/FLY_DB.sql
inst/DBschemas/schemas_2.0/GO_DB.sql
inst/DBschemas/schemas_2.0/HUMANCHIP_DB.sql
inst/DBschemas/schemas_2.0/HUMAN_DB.sql
inst/DBschemas/schemas_2.0/INPARANOID_DB.sql
inst/DBschemas/schemas_2.0/KEGG_DB.sql
inst/DBschemas/schemas_2.0/MALARIA_DB.sql
inst/DBschemas/schemas_2.0/MOUSECHIP_DB.sql
inst/DBschemas/schemas_2.0/MOUSE_DB.sql
inst/DBschemas/schemas_2.0/PFAM_DB.sql
inst/DBschemas/schemas_2.0/PIG_DB.sql
inst/DBschemas/schemas_2.0/RATCHIP_DB.sql
inst/DBschemas/schemas_2.0/RAT_DB.sql
inst/DBschemas/schemas_2.0/RHESUS_DB.sql
inst/DBschemas/schemas_2.0/WORMCHIP_DB.sql
inst/DBschemas/schemas_2.0/WORM_DB.sql
inst/DBschemas/schemas_2.0/XENOPUSCHIP_DB.sql
inst/DBschemas/schemas_2.0/XENOPUS_DB.sql
inst/DBschemas/schemas_2.0/YEASTCHIP_DB.sql
inst/DBschemas/schemas_2.0/YEAST_DB.sql
inst/DBschemas/schemas_2.0/ZEBRAFISHCHIP_DB.sql
inst/DBschemas/schemas_2.0/ZEBRAFISH_DB.sql
inst/DBschemas/schemas_2.1/00README.TXT
inst/DBschemas/schemas_2.1/ANOPHELES_DB.sql
inst/DBschemas/schemas_2.1/ARABIDOPSISCHIP_DB.sql
inst/DBschemas/schemas_2.1/ARABIDOPSIS_DB.sql
inst/DBschemas/schemas_2.1/BOVINECHIP_DB.sql
inst/DBschemas/schemas_2.1/BOVINE_DB.sql
inst/DBschemas/schemas_2.1/CANINECHIP_DB.sql
inst/DBschemas/schemas_2.1/CANINE_DB.sql
inst/DBschemas/schemas_2.1/CHICKENCHIP_DB.sql
inst/DBschemas/schemas_2.1/CHICKEN_DB.sql
inst/DBschemas/schemas_2.1/CHIMP_DB.sql
inst/DBschemas/schemas_2.1/COELICOLOR_DB.sql
inst/DBschemas/schemas_2.1/DataTypes.txt
inst/DBschemas/schemas_2.1/ECOLI_DB.sql
inst/DBschemas/schemas_2.1/FLYCHIP_DB.sql
inst/DBschemas/schemas_2.1/FLY_DB.sql
inst/DBschemas/schemas_2.1/GO_DB.sql
inst/DBschemas/schemas_2.1/HUMANCHIP_DB.sql
inst/DBschemas/schemas_2.1/HUMAN_DB.sql
inst/DBschemas/schemas_2.1/INPARANOID_DB.sql
inst/DBschemas/schemas_2.1/KEGG_DB.sql
inst/DBschemas/schemas_2.1/MALARIA_DB.sql
inst/DBschemas/schemas_2.1/MOUSECHIP_DB.sql
inst/DBschemas/schemas_2.1/MOUSE_DB.sql
inst/DBschemas/schemas_2.1/PFAM_DB.sql
inst/DBschemas/schemas_2.1/PIG_DB.sql
inst/DBschemas/schemas_2.1/RATCHIP_DB.sql
inst/DBschemas/schemas_2.1/RAT_DB.sql
inst/DBschemas/schemas_2.1/RHESUS_DB.sql
inst/DBschemas/schemas_2.1/WORMCHIP_DB.sql
inst/DBschemas/schemas_2.1/WORM_DB.sql
inst/DBschemas/schemas_2.1/XENOPUSCHIP_DB.sql
inst/DBschemas/schemas_2.1/XENOPUS_DB.sql
inst/DBschemas/schemas_2.1/YEASTCHIP_DB.sql
inst/DBschemas/schemas_2.1/YEAST_DB.sql
inst/DBschemas/schemas_2.1/ZEBRAFISHCHIP_DB.sql
inst/DBschemas/schemas_2.1/ZEBRAFISH_DB.sql
inst/NOTES-Herve
inst/TODO
inst/extdata/HG-U95Av2_probe_tab.gz
inst/extdata/Inp_species_mapping
inst/extdata/hcg110_ID
inst/extdata/hgu95av2_ID
inst/extdata/manyToOneBlackList.Rda
inst/extdata/org.testing.db/DESCRIPTION
inst/extdata/org.testing.db/NAMESPACE
inst/extdata/org.testing.db/R/zzz.R
inst/extdata/org.testing.db/inst/extdata/org.testing.sqlite
inst/extdata/org.testing.db/man/org.TguttataTestingSubset.egBASE.Rd
inst/extdata/org.testing.db/man/org.TguttataTestingSubset.egORGANISM.Rd
inst/extdata/org.testing.db/man/org.TguttataTestingSubset.eg_dbconn.Rd
inst/extdata/resultTable.Rda
inst/script/generateMultiCols.R inst/unitTests/test_bimap.R inst/unitTests/test_geneCentricDbs.R inst/unitTests/test_mapIds.R inst/unitTests/test_select.R inst/unitTests/test_select_NOSCHEMA.R inst/unitTests/test_select_reactome.R man/AnnDbObj-class.Rd man/AnnDbPkg-checker.Rd man/AnnotationDb-class.Rd man/AnnotationDbi-internals.Rd man/Bimap-direction.Rd man/Bimap-envirAPI.Rd man/Bimap-keys.Rd man/Bimap-toTable.Rd man/Bimap.Rd man/BimapFiltering.Rd man/BimapFormatting.Rd man/GOColsAndKeytypes.Rd man/GOFrame.Rd man/GOTerms-class.Rd man/KEGGFrame.Rd man/colsAndKeytypes.Rd man/createSimpleBimap.Rd man/inpIDMapper.Rd man/makeGOGraph.Rd man/make_eg_to_go_map.Rd man/orgPackageName.Rd man/organismKEGGFrame.Rd man/print.probetable.Rd man/toSQLStringSet.Rd man/unlist2.Rd tests/AnnotationDbi_unit_tests.R
vignettes/AnnotationDbi.Rnw
vignettes/IntroToAnnotationPackages.Rnw
vignettes/databaseTypes.pdf
jmacdon/AnnotationDbi documentation built on Oct. 22, 2021, 9:14 p.m.

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