Global functions | |
---|---|
.onAttach | Source code |
.onUnload | Source code |
AffyDate2Posix | Source code |
GetAffyTimeDateAsString | Source code |
HuberAllRowsByGroup | Source code |
LLR2conf | Source code |
MAplot | Man page |
MAplot,ExpressionSet-method | Man page |
MAplot,FeatureSet-method | Man page |
MAplot,PLMset-method | Man page |
MAplot,TilingFeatureSet-method | Man page |
MAplot,matrix-method | Man page |
MAplot-methods | Man page |
NUSE | Man page Source code |
NUSE,oligoPLM-method | Man page |
NgsDate2Posix | Source code |
RLE | Man page Source code |
RLE,oligoPLM-method | Man page |
alleleSetFrom | Source code |
annotation,oligoPLM-method | Man page |
availProbeInfo | Man page Source code |
backgroundCorrect | Man page |
backgroundCorrect,FeatureSet-method | Man page |
backgroundCorrect,ff_matrix-method | Man page |
backgroundCorrect,matrix-method | Man page |
backgroundCorrect-methods | Man page |
backgroundCorrectionMethods | Man page Source code |
basecontent | Man page Source code |
basicAnnotatedDataFrame | Source code |
basicMedianPolishBO | Source code |
basicMvAplot | Source code |
basicPData | Source code |
basicPData2 | Source code |
basicPLM | Man page Source code |
basicPhData1 | Source code |
basicPhData2 | Source code |
basicRMA | Man page Source code |
basicRMAbo | Source code |
bg | Man page |
bg,FeatureSet-method | Man page |
bg,TilingFeatureSet-method | Man page |
bg<- | Man page |
bg<-,FeatureSet,ff_matrix-method | Man page |
bg<-,FeatureSet,matrix-method | Man page |
bg<-,TilingFeatureSet,array-method | Man page |
bgLESN | Source code |
bgMAS | Source code |
bgMASFS | Source code |
bgSequence | Man page |
bgSequence,DBPDInfo-method | Man page |
bgSequence,ExonFeatureSet-method | Man page |
bgSequence,FeatureSet-method | Man page |
bgSequence,GeneFeatureSet-method | Man page |
bgShift | Source code |
bgStretch | Source code |
bgindex | Man page |
bgindex,DBPDInfo-method | Man page |
bgindex,FeatureSet-method | Man page |
boxplot | Man page |
boxplot,ExpressionSet-method | Man page |
boxplot,FeatureSet-method | Man page |
boxplot,PLMset-method | Man page |
boxplot,oligoPLM-method | Man page |
boxplot-methods | Man page |
checkChipTypes | Source code |
checkValidFilenames | Source code |
chromosome | Man page |
chromosome<- | Man page |
chromosome<-,AnnotatedDataFrame,character-method | Man page |
cleanPlatformName | Man page Source code |
cloneFS | Source code |
coef,oligoPLM-method | Man page |
coefs | Man page |
coefs.probe | Man page |
coefs.probe,oligoPLM-method | Man page |
computeDABG | Source code |
computePSDABG | Source code |
constantNorm | Source code |
crlmm | Man page Source code |
crlmm.old | Source code |
crlmm2 | Source code |
darkColors | Man page Source code |
divColors | Man page Source code |
f | Source code |
ffSubset | Source code |
fitAffySnpMixture | Source code |
fitAffySnpMixture2 | Source code |
fitAffySnpMixture56 | Source code |
fitPLM | Man page |
fitProbeLevelModel | Man page Source code |
g | Source code |
gcCounts | Source code |
genotypeByChromosome | Source code |
genotypeOne | Source code |
geometry,oligoPLM-method | Man page |
getAffinitySplineCoefficients | Man page Source code |
getAffySnpCalls | Source code |
getAffySnpCalls56 | Source code |
getAffySnpConfidence | Source code |
getAffySnpConfidence56 | Source code |
getAffySnpDistance | Source code |
getAffySnpDistanceSingle | Source code |
getAffySnpDistanceSingle56 | Source code |
getAffySnpGenotypeRegionParams | Source code |
getAffySnpPriors | Source code |
getAllRowsSomeCols | Source code |
getBaseProfile | Man page Source code |
getCelChipType | Source code |
getChrXIndex | Source code |
getContainer | Man page |
getContainer,TilingFeatureSet-method | Man page |
getContainer-methods | Man page |
getCrlmmSummaries | Man page Source code |
getDefaultParsNormAdv | Source code |
getFSetInfo | Source code |
getFeatureInfo | Source code |
getFidMetaProbesetCore | Source code |
getFidMetaProbesetExtended | Source code |
getFidMetaProbesetFull | Source code |
getFidProbeset | Source code |
getFilenames | Source code |
getFragmentLength | Source code |
getFromListAsVector | Source code |
getGenotypeRegionParams | Source code |
getInitialAffySnpCalls | Source code |
getInitialAffySnpCalls2 | Source code |
getMPSInfo | Source code |
getNetAffx | Man page |
getNetAffx,ExpressionSet-method | Man page |
getNetAffx-methods | Man page |
getNgsColorsInfo | Man page Source code |
getPD | Man page |
getPlatformDesign | Man page |
getPlatformDesign,FeatureSet-method | Man page |
getProbeIndex | Source code |
getProbeInfo | Man page Source code |
getProbeTargets | Source code |
getProbeTypes | Source code |
getRefDABG | Source code |
getSnpFragmentLength | Source code |
getSnpLocInfo | Source code |
getSnpNames | Source code |
getSnpProbeInfo | Source code |
getSomeRowsAllCols | Source code |
getSomeRowsSomeCols | Source code |
getX | Man page |
getX,DBPDInfo-method | Man page |
getX,FeatureSet-method | Man page |
getX-methods | Man page |
getY | Man page |
getY,DBPDInfo-method | Man page |
getY,FeatureSet-method | Man page |
getY-methods | Man page |
hist | Man page |
hist,ExpressionSet-method | Man page |
hist,FeatureSet-method | Man page |
hist-methods | Man page |
image | Man page |
image,FeatureSet-method | Man page |
image,PLMset-method | Man page |
image,oligoPLM-method | Man page |
image-methods | Man page |
intensity | Man page |
intensity,FeatureSet-method | Man page |
intensity<- | Man page |
intensity<-,FeatureSet-method | Man page |
invariantsetNorm | Source code |
justCRLMM | Man page Source code |
justCRLMM2 | Source code |
justCRLMMv2 | Source code |
justCRLMMv3 | Source code |
justCRLMMv4 | Source code |
justSNPRMA | Man page Source code |
list.xysfiles | Man page Source code |
liteNormalization | Source code |
liteNormalization2 | Source code |
loessNormV | Source code |
manufacturer,oligoPLM-method | Man page |
matDensity | Source code |
method | Man page |
method,oligoPLM-method | Man page |
mm | Man page |
mm,FeatureSet-method | Man page |
mm,TilingFeatureSet-method | Man page |
mm<- | Man page |
mm<-,FeatureSet,ANY,ANY,ff_matrix-method | Man page |
mm<-,FeatureSet,ANY,ANY,matrix-method | Man page |
mm<-,TilingFeatureSet,ANY,ANY,array-method | Man page |
mmSequence | Man page |
mmSequence,AffySNPPDInfo-method | Man page |
mmSequence,DBPDInfo-method | Man page |
mmSequence,FeatureSet-method | Man page |
mmindex | Man page |
mmindex,DBPDInfo-method | Man page |
mmindex,FeatureSet-method | Man page |
msgOK | Source code |
my.abind | Source code |
ncol,oligoPLM-method | Man page |
normalizationMethods | Man page Source code |
normalize,FeatureSet-method | Man page |
normalize,ff_matrix-method | Man page |
normalize,matrix-method | Man page |
normalizeAdv | Source code |
normalizeOne | Source code |
normalizeToTarget | Man page |
normalizeToTarget,ff_matrix-method | Man page |
normalizeToTarget,matrix-method | Man page |
normalizeToTarget-methods | Man page |
nprobes | Man page |
nprobes,oligoPLM-method | Man page |
nprobesets | Man page |
nprobesets,oligoPLM-method | Man page |
oligo-defunct | Man page |
oligo-package | Man page |
oligoPLM | Man page |
oligoPLM-class | Man page |
oligoReadCels | Source code |
oligoReadXys | Source code |
opset2eset | Man page |
opset2eset,oligoPLM-method | Man page |
outputEqualizer | Source code |
paCalls | Man page |
paCalls,ExonFeatureSet-method | Man page |
paCalls,ExpressionFeatureSet-method | Man page |
paCalls,GeneFeatureSet-method | Man page |
paMAS5 | Source code |
pair2xys | Source code |
plm1Probeset | Source code |
plotM | Man page Source code |
plotM,SnpQSet,character-method | Man page |
plotM,SnpQSet,integer-method | Man page |
plotM,SnpQSet,numeric-method | Man page |
plotM,TilingQSet,missing-method | Man page |
plotM-methods | Man page |
pm | Man page |
pm,FeatureSet-method | Man page |
pm,GenericFeatureSet-method | Man page |
pm,TilingFeatureSet-method | Man page |
pm<- | Man page |
pm<-,FeatureSet,ANY,ANY,ff_matrix-method | Man page |
pm<-,FeatureSet,ANY,ANY,matrix-method | Man page |
pm<-,GenericFeatureSet,ANY,ANY,ff_matrix-method | Man page |
pm<-,GenericFeatureSet,ANY,ANY,matrix-method | Man page |
pm<-,TilingFeatureSet,ANY,ANY,array-method | Man page |
pmAllele | Man page |
pmAllele,AffySNPPDInfo-method | Man page |
pmAllele,SnpFeatureSet-method | Man page |
pmChr | Man page |
pmChr,ExonFeatureSet-method | Man page |
pmChr,FeatureSet-method | Man page |
pmChr,GeneFeatureSet-method | Man page |
pmFragmentLength | Man page |
pmFragmentLength,AffySNPPDInfo-method | Man page |
pmFragmentLength,SnpFeatureSet-method | Man page |
pmOffset | Man page |
pmOffset,AffySNPPDInfo-method | Man page |
pmPosition | Man page |
pmPosition,ExpressionPDInfo-method | Man page |
pmPosition,FeatureSet-method | Man page |
pmPosition,TilingFeatureSet-method | Man page |
pmPosition,TilingPDInfo-method | Man page |
pmSequence | Man page |
pmSequence,AffyGenePDInfo-method | Man page |
pmSequence,AffySNPPDInfo-method | Man page |
pmSequence,DBPDInfo-method | Man page |
pmSequence,ExonFeatureSet-method | Man page |
pmSequence,FeatureSet-method | Man page |
pmSequence,GeneFeatureSet-method | Man page |
pmSequence,stArrayDBPDInfo-method | Man page |
pmStrand | Man page |
pmStrand,AffySNPPDInfo-method | Man page |
pmStrand,TilingFeatureSet-method | Man page |
pmindex | Man page |
pmindex,DBPDInfo-method | Man page |
pmindex,FeatureSet-method | Man page |
pmindex,GenericFeatureSet-method | Man page |
pmindex,GenericPDInfo-method | Man page |
pmindex,stArrayDBPDInfo-method | Man page |
probeNames | Man page |
probeNames,DBPDInfo-method | Man page |
probeNames,ExonFeatureSet-method | Man page |
probeNames,FeatureSet-method | Man page |
probeNames,GeneFeatureSet-method | Man page |
probeNames,stArrayDBPDInfo-method | Man page |
probesetNames | Man page |
probesetNames,FeatureSet-method | Man page |
qnTargetStatsLDSnode | Source code |
qnToTargetLDSnode | Source code |
quantileNormalizationLDSmaster | Source code |
read.celfiles | Man page Source code |
read.celfiles2 | Man page Source code |
read.mc.celfiles | Source code |
read.xysfiles | Man page Source code |
read.xysfiles2 | Man page Source code |
readCEL | Source code |
readChipTypesFromCels | Source code |
readSummaries | Man page Source code |
readXysMatrix | Source code |
readonexysfile | Source code |
readxysHeader | Source code |
replaceAffySnpParams | Source code |
replaceAffySnpParamsSingle | Source code |
resids | Man page |
residualSE | Man page |
residualSE,oligoPLM-method | Man page |
residuals,oligoPLM-method | Man page |
rma | Man page |
rma,ExonFeatureSet-method | Man page |
rma,ExpressionFeatureSet-method | Man page |
rma,GeneFeatureSet-method | Man page |
rma,GenericFeatureSet-method | Man page |
rma,HTAFeatureSet-method | Man page |
rma,SnpCnvFeatureSet-method | Man page |
rma-methods | Man page |
rmaBgCorrectLDSmaster | Source code |
rmaBgCorrectLDSnode | Source code |
rowEntropy | Source code |
rowIndepChiSqTest | Source code |
runDate | Man page |
runDate,FeatureSet-method | Man page |
runDate-methods | Man page |
runPLM | Source code |
runSummarize | Source code |
saveAppendMatrix | Source code |
se | Man page |
se,oligoPLM-method | Man page |
se.probe | Man page |
se.probe,oligoPLM-method | Man page |
seqColors | Man page Source code |
seqColors2 | Man page Source code |
sequenceDesignMatrix | Man page Source code |
show,oligoPLM-method | Man page |
smartReadCEL | Source code |
smartReadXYS | Source code |
snpGenderCall | Source code |
snprma | Man page Source code |
snprma2 | Source code |
sqsFrom | Source code |
sqsFrom.SnpCnv | Source code |
stArrayPmInfo | Source code Source code |
summarizationMethods | Man page Source code |
summarize | Man page |
summarize,ff_matrix-method | Man page |
summarize,matrix-method | Man page |
summarize-methods | Man page |
trigammaInverse | Source code |
txtMsg | Source code |
updateAffySnpParams | Source code |
updateAffySnpParamsSingle | Source code |
weights,oligoPLM-method | Man page |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.