basicRMA: Simplified interface to RMA.

Description Usage Arguments Value Examples

View source: R/methods-summarization.R

Description

Simple interface to RMA.

Usage

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basicRMA(pmMat, pnVec, normalize = TRUE, background = TRUE, bgversion = 2, destructive = FALSE, verbose = TRUE, ...)

Arguments

pmMat

Matrix of intensities to be processed.

pnVec

Probeset names.

normalize

Logical flag: normalize?

background

Logical flag: background adjustment?

bgversion

Version of background correction.

destructive

Logical flag: use destructive methods?

verbose

Logical flag: verbose.

...

Not currently used.

Value

Matrix.

Examples

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set.seed(1)
pms <- 2^matrix(rnorm(1000), nc=20)
colnames(pms) <- paste("sample", 1:20, sep="")
pns <- rep(letters[1:10], each=5)
res <- basicRMA(pms, pns, TRUE, TRUE)
res[, 1:3]

jmacdon/oligo documentation built on Aug. 11, 2020, 12:32 a.m.