justSNPRMA: Summarization of SNP data

Description Usage Arguments Value Examples

View source: R/justSNPRMA.R

Description

This function implements the SNPRMA method for summarization of SNP data. It works directly with the CEL files, saving memory.

Usage

1
justSNPRMA(filenames, verbose = TRUE, phenoData = NULL, normalizeToHapmap = TRUE)

Arguments

filenames

character vector with the filenames.

verbose

logical flag for verbosity.

phenoData

a phenoData object or NULL

normalizeToHapmap

Normalize to Hapmap? Should always be TRUE, but it's kept here for future use.

Value

SnpQSet or a SnpCnvQSet, depending on the array type.

Examples

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## snprmaResults <- justSNPRMA(list.celfiles())

jmacdon/oligo documentation built on Aug. 11, 2020, 12:32 a.m.