Files in jmacdon/oligo
Preprocessing tools for oligonucleotide arrays
.Rbuildignore
.Rinstignore
.travis.yml
CHANGES
DESCRIPTION
NAMESPACE
R/AllGenerics.R
R/functions-crlmm.R
R/functions-snprma.R
R/justCRLMM.R
R/justSNPRMA.R
R/methods-DBPDInfo.R
R/methods-ExonFeatureSet.R
R/methods-ExpressionFeatureSet.R
R/methods-ExpressionSet.R
R/methods-FeatureSet.R
R/methods-GeneFeatureSet.R
R/methods-GenericArrays.R
R/methods-HtaFeatureSet.R
R/methods-LDS.R
R/methods-PLMset.R
R/methods-SnpCnvFeatureSet.R
R/methods-SnpFeatureSet.R
R/methods-TilingFeatureSet.R
R/methods-background.R
R/methods-genotype.R
R/methods-normalization.R
R/methods-snp6.R
R/methods-summarization.R
R/read.celfiles.R
R/read.xysfiles.R
R/todo-snp.R
R/utils-general.R
R/utils-selectors.R
R/zzz.R
README.md
TODO.org
cleanup
cleanup.win
inst/CITATION
inst/NEWS.Rd
inst/scripts/FrameworkPreprocessing.bib
inst/scripts/getVersions.sh
inst/scripts/oligoVignette.bib
inst/scripts/oug.Rnw
inst/scripts/oug.pdf
inst/scripts/primer.Rnw
inst/scripts/primer.pdf
inst/unitTests/fids_ref0.rda
inst/unitTests/gen_rma_t0.R
inst/unitTests/gen_selector0.R
inst/unitTests/i0.rda
inst/unitTests/rma_ref0.rda
inst/unitTests/test_rma.R
inst/unitTests/test_selector.R
man/Index-methods.Rd
man/IntensityMatrix-methods.Rd
man/MAplot-methods.Rd
man/Sequences-methods.Rd
man/basecontent.Rd
man/basicPLM.Rd
man/basicRMA.Rd
man/boxplot.Rd
man/chromosome.Rd
man/colors.Rd
man/coordinates.Rd
man/crlmm.Rd
man/fitProbeLevelModel.Rd
man/getAffinitySplineCoefficients.Rd
man/getBaseProfile.Rd
man/getContainer.Rd
man/getCrlmmSummaries.Rd
man/getNetAffx.Rd
man/getNgsColorsInfo.Rd
man/getPlatformDesign.Rd
man/getProbeInfo.Rd
man/hist.Rd
man/image.Rd
man/justSNPRMA.Rd
man/list.xysfiles.Rd
man/oligo-package.Rd
man/oligoDefunct.Rd
man/oligoPLM-class.Rd
man/paCalls.Rd
man/plotM-methods.Rd
man/pmAllele.Rd
man/pmFragmentLength.Rd
man/pmPosition.Rd
man/pmStrand.Rd
man/preprocessTools.Rd
man/probeNames.Rd
man/read.celfiles.Rd
man/read.xysfiles.Rd
man/readSummaries.Rd
man/rma-methods.Rd
man/runDate.Rd
man/sequenceDesignMatrix.Rd
man/snprma.Rd
src/DABG.c
src/Makevars
src/Makevars.win
src/ParserGzXYS.c
src/ParserXYS.c
src/baseProfile.c
src/basecontent.c
src/chipbackground.c
src/mas5calls.c
src/rma2.c
src/rma_common.c
src/rma_common.h
src/trimmed.c
tests/doRUnit.R
vignettes/Makefile
vignettes/oug.Rnw
