SummarizedExperiment-methods: Methods for RangedSummarizedExperiment objects

In jmacdon/oligoClasses: Classes for high-throughput arrays supported by oligo and crlmm

Description

Methods for RangedSummarizedExperiment.

Usage

## S4 method for signature 'RangedSummarizedExperiment'
baf(object)
## S4 method for signature 'RangedSummarizedExperiment'
chromosome(object,...)
## S4 method for signature 'RangedSummarizedExperiment'
isSnp(object, ...)
## S4 method for signature 'RangedSummarizedExperiment'
lrr(object)

Arguments

object	A RangedSummarizedExperiment object.
...	ignored

Details

baf and lrr are accessors for the B allele frequencies and log R ratio assays (matrices or arrays), respectively,

chromosome returns the seqnames of the rowRanges.

isSnp returns a logical vector for each marker in rowRanges indicating whether the marker targets a SNP (nonpolymorphic regions are FALSE).

See Also

RangedSummarizedExperiment

jmacdon/oligoClasses documentation built on Aug. 11, 2020, 12:32 a.m.