Description Usage Arguments Value Examples
View source: R/draw_TICspectrum.R
Based on the measures preprocessed by the function precook_measures(), the function draw_TICspectrum() pretends to draw the TIC spectrum of diferent samples
1 2 3 |
cdf_folder |
directory containing the precooked measures (files preckd_measures.rda and preckd_variables.rda). Presumabily should be the same directory where the original measures are (ncdf4 files). E.g. cdf_folder="C:/esborrar_mesuresGcxGc/mesures_Berkely_Noelia" |
samplestodraw_TIC |
list of samples whose TIC spectrum needs to be drawed. The samples shoul be referred by their file position on a alphabetical ordered file list. Moreover, it can be drawed the result of adding or substracting a combination of samples; that operation should be indicated with a vector of samples, indicating with a minus the sample that should be substracted. e.g. list(1,2,c(1,-3)) means draw the 1st and second sample, as well as the result of substract the 3rd sample from the 1st |
samplestodraw_altTIC |
analogously to the previous argument, list of samples whose "altered" TIC spectrum needs to be drawed. Altered TIC is refered to a TIC without specific masses (see precook_measures() function). See the samplestodraw_TIC argument for further details. |
samplestodraw_LOGTIC |
list of samples whose log(TIC) spectrum needs to be drawed. e.g. samplestodraw_LOGTIC=list(c(1,-3),2) draws two plots, log(TIC(sample3)-log(TIC(sample1) and log(TIC(sample2). |
samplestodraw_LOGaltTIC |
analogously to the samplestodraw_LOGTIC argument, list of samples whose TIC spectrum needs to be drawed logarithmically. The only diference is that the TIC ploted is the altered one, a TIC without specific masses (see precook_measures() function). |
colors |
Colors used to draw the diferent spectrum samples. Visit http://colorbrewer2.org to improve your ideas. e.g. colors=c("red","black","#fdc086","grey","#7fc97f") |
Different spectrums are drawn in the viewer tab. Moreover the parameters used for preprocessing the data (through precook_measures()) are printed on screen as remembrance.
1 |
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.