GencodeVM12mm10caiCtBad: Count of Bad CAI codons for Gencode mouse mm10 vM12
In jmw86069/farrisdata: Farris et al 2019, mouse hippocampus RNA-seq data objects
GencodeVM12mm10caiCtBad R Documentation
Count of Bad CAI codons for Gencode mouse mm10 vM12
Description
Count of Bad CAI codons for Gencode mouse mm10 vM12
Usage
GencodeVM12mm10caiCtBad
Format
integer number of codons where the CAI is 0.3
or lower, named by transcript_name defined in the Gencode
GTF file for vM12.
Details
This data is derived from codon adaptability index (CAI)
data, summarized to count the number of residues where
the CAI value is 0.3 or lower. This value indicates the
codon is no more than 30% the maximum codon for a given
amino acid.
See Also
Other Mouse codon usage data:
GencodeVM12mm10caiCtLow,
GencodeVM12mm10caiQ1mean,
GencodeVM12mm10cai,
GencodeVM12mm10cdsLength
Examples
data(GencodeVM12mm10caiCtBad);
## Print the first 20 entries
print(head(GencodeVM12mm10caiCtBad, 20));
jmw86069/farrisdata documentation built on Oct. 14, 2024, 6:29 p.m.
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| GencodeVM12mm10caiCtBad | R Documentation |
Count of Bad CAI codons for Gencode mouse mm10 vM12
Description
Count of Bad CAI codons for Gencode mouse mm10 vM12
Usage
GencodeVM12mm10caiCtBad
Format
integer number of codons where the CAI is 0.3
or lower, named by transcript_name defined in the Gencode
GTF file for vM12.
Details
This data is derived from codon adaptability index (CAI) data, summarized to count the number of residues where the CAI value is 0.3 or lower. This value indicates the codon is no more than 30% the maximum codon for a given amino acid.
See Also
Other Mouse codon usage data:
GencodeVM12mm10caiCtLow,
GencodeVM12mm10caiQ1mean,
GencodeVM12mm10cai,
GencodeVM12mm10cdsLength
Examples
data(GencodeVM12mm10caiCtBad);
## Print the first 20 entries
print(head(GencodeVM12mm10caiCtBad, 20));
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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