GencodeVM12mm10caiCtLow: Count of Low CAI codons for Gencode mouse mm10 vM12
In jmw86069/farrisdata: Farris et al Mouse Hippocampus RNA-seq data objects
Description
Usage
Format
Details
See Also
Examples
Description
Count of Low CAI codons for Gencode mouse mm10 vM12
Usage
1
Format
integer number of codons where the CAI is 0.5
or lower, named by transcript_name defined in the Gencode
GTF file for vM12.
Details
This data is derived from codon adaptability index (CAI)
data, summarized to count the number of residues where
the CAI value is 0.5 or lower. This value indicates the
codon is no more than 50
amino acid.
See Also
Other Mouse codon usage data: GencodeVM12mm10caiQ1mean,
GencodeVM12mm10cdsLength
Examples
1
2
3
data(GencodeVM12mm10caiCtLow);
## Print the first 20 entries
print(head(GencodeVM12mm10caiCtLow, 20));
jmw86069/farrisdata documentation built on Oct. 8, 2019, 9:56 p.m.
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Description Usage Format Details See Also Examples
Description
Count of Low CAI codons for Gencode mouse mm10 vM12
Usage
1 |
Format
integer number of codons where the CAI is 0.5 or lower, named by transcript_name defined in the Gencode GTF file for vM12.
Details
This data is derived from codon adaptability index (CAI) data, summarized to count the number of residues where the CAI value is 0.5 or lower. This value indicates the codon is no more than 50 amino acid.
See Also
Other Mouse codon usage data: GencodeVM12mm10caiQ1mean,
GencodeVM12mm10cdsLength
Examples
1 2 3 | data(GencodeVM12mm10caiCtLow);
## Print the first 20 entries
print(head(GencodeVM12mm10caiCtLow, 20));
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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