GencodeVM12mm10caiQ1mean: Mean of Q1 CAI values for Gencode mouse mm10 vM12
In jmw86069/farrisdata: Farris et al 2019, mouse hippocampus RNA-seq data objects
GencodeVM12mm10caiQ1mean R Documentation
Mean of Q1 CAI values for Gencode mouse mm10 vM12
Description
Mean of Q1 CAI values for Gencode mouse mm10 vM12
Usage
GencodeVM12mm10caiQ1mean
Format
numeric vector with the mean CAI value from the lowest
quartile of CAI values per transcript,
named by transcript_name defined in the Gencode
GTF file for vM12.
Details
This data is derived from codon adaptability index (CAI)
data, summarized to represent the mean of the lowest quartile
of CAI values per transcript.
See Also
Other Mouse codon usage data:
GencodeVM12mm10caiCtBad,
GencodeVM12mm10caiCtLow,
GencodeVM12mm10cai,
GencodeVM12mm10cdsLength
Examples
data(GencodeVM12mm10caiQ1mean);
## Print the first 20 entries
print(head(GencodeVM12mm10caiQ1mean, 20));
jmw86069/farrisdata documentation built on Oct. 14, 2024, 6:29 p.m.
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| GencodeVM12mm10caiQ1mean | R Documentation |
Mean of Q1 CAI values for Gencode mouse mm10 vM12
Description
Mean of Q1 CAI values for Gencode mouse mm10 vM12
Usage
GencodeVM12mm10caiQ1mean
Format
numeric vector with the mean CAI value from the lowest
quartile of CAI values per transcript,
named by transcript_name defined in the Gencode
GTF file for vM12.
Details
This data is derived from codon adaptability index (CAI) data, summarized to represent the mean of the lowest quartile of CAI values per transcript.
See Also
Other Mouse codon usage data:
GencodeVM12mm10caiCtBad,
GencodeVM12mm10caiCtLow,
GencodeVM12mm10cai,
GencodeVM12mm10cdsLength
Examples
data(GencodeVM12mm10caiQ1mean);
## Print the first 20 entries
print(head(GencodeVM12mm10caiQ1mean, 20));
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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