plot_GSEA_single: draw 3 figures for the results of GSEA_gene_single function

In jmzeng1314/geneSet:

Description

Firstly you need to do GSEA Tests for a list of geneSets,and get the results, then just use this function to draw some pictures.

Usage

plot_GSEA_single(GSEA_single_results, gene_values = rnorm(100),
  geneSet_name = "geneset1", phen1 = "case", phen2 = "control",
  imageType = "png", multiple = T)

Arguments

GSEA_single_results	A list contain 4 elements: ES,rand_es, p and ismem
gene_values	A vector of values for each gene,most of time it's signal 2 noise.
imageType	choose png,pdf,emf,tiff,jpeg,bmp
multiple	plot 3 ugly figures or just 1(pretty),default:T
this_geneSet	The name of current geneSet,default:geneset1

Value

image file:

Examples

plot_GSEA_single();lapply(GSEA_gene_multiple(),plot_GSEA_single)

jmzeng1314/geneSet documentation built on May 19, 2019, 2:57 p.m.