plotGraph: Plot graph
In jnpaulson/pandaR: PANDA Algorithm

plotGraph

R Documentation

Plot graph

Description

plotGraph plots a bipartite graph

Usage

plotGraph(x)

Arguments

`x`	an object of class "panda"

Value

An matrix describing the subsetted bipartite network.

Examples


data(pandaToyData)
pandaRes <- panda(pandaToyData$motif,
           pandaToyData$expression,pandaToyData$ppi,hamming=.001,progress=TRUE)
topPandaRes <- topedges(pandaRes,1000)
subnet.pandaRes <- subnetwork(topPandaRes,c("AR","ARID3A","ELK1"))
plotGraph(subnet.pandaRes)

data(pandaResult)
topPandaRes <- topedges(pandaResult, 1000)
subnet.pandaRes <- subnetwork(topPandaRes,c("AR","ARID3A","ELK1"))
plotGraph(subnet.pandaRes)

jnpaulson/pandaR documentation built on Oct. 1, 2023, 3:14 a.m.