plotZbyTF: Plot Z by TF out-degree quantiles

In jnpaulson/pandaR: PANDA Algorithm

Plot Z by TF out-degree quantiles

Description

Generates a Z-score scatterplot for edges according to the TF outdegree in prior. The two PANDA objects should only differ in the gene expression used for the network constructions or other parameters.

Usage

plotZbyTF(x, y, motif, hasPrior = TRUE, cuts = 1, cols = 2)

Arguments

x	PANDA object - output of the panda function.
y	PANDA object - second PANDA object.
motif	Motif used to construct the networks.
hasPrior	TRUE/FALSE, If TRUE plots the edges that are given a weight > 0 in the motif, else plot those given a weight of 0
cuts	either a numeric vector of two or more unique cut points or a single number (greater than or equal to 2) giving the number of intervals into which 'x' is to be cut.
cols	Number of columns in layout.

Value

ggplot heatmapfor each TF, get outdegree in regulatory prior

Examples

data(pandaResult)
data(pandaToyData)
plotZbyTF(pandaResult,pandaResult, pandaToyData$motif, hasPrior=TRUE)
plotZbyTF(pandaResult,pandaResult, pandaToyData$motif, cuts=2)

jnpaulson/pandaR documentation built on May 13, 2024, 11:30 a.m.