This is for instantiating a biom object within R (
and assumes relevant data is already available in R.
This is different than reading a biom file into R.
If you are instead interested in importing a biom file into R,
you should use the
This function is made available (exported) so that
can easily represent analogous data in this structure if needed.
However, most users are expected to instead rely on the
read_biom function for data import, followed by
accessor functions that extract R-friendly
subsets of the data stored in the biom-format derived list.
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(REQUIRED). A named list conforming to conventions arising from
biom() is a constructor method. This is the main method
suggested for constructing an experiment-level (
object from its component data.
An instance of the
Function to create a biom object from R data,
Definition of the
read_biom import function.
Function to write a biom format file from a biom object,
Accessor functions like
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