sample_sums: Returns the total number of individuals observed from each...
In joey711/phyloseq: Handling and analysis of high-throughput microbiome census data
View source: R/otuTable-class.R
sample_sums R Documentation
Returns the total number of individuals observed from each sample.
Description
A convenience function equivalent to rowSums or colSums, but where
the orientation of the otu_table is automatically handled.
Usage
sample_sums(x)
Arguments
x
otu_table-class, or phyloseq-class.
Value
A named numeric-class
length equal to the number of samples
in the x, name indicating the sample ID, and value equal to the sum of
all individuals observed for each sample in x.
See Also
taxa_sums, rowSums, colSums
Examples
data(enterotype)
sample_sums(enterotype)
data(esophagus)
sample_sums(esophagus)
joey711/phyloseq documentation built on Nov. 4, 2022, 1:16 a.m.
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View source: R/otuTable-class.R
| sample_sums | R Documentation |
Returns the total number of individuals observed from each sample.
Description
A convenience function equivalent to rowSums or colSums, but where the orientation of the otu_table is automatically handled.
Usage
sample_sums(x)
Arguments
x |
|
Value
A named numeric-class
length equal to the number of samples
in the x, name indicating the sample ID, and value equal to the sum of
all individuals observed for each sample in x.
See Also
taxa_sums, rowSums, colSums
Examples
data(enterotype) sample_sums(enterotype) data(esophagus) sample_sums(esophagus)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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