taxa_names-methods: Get species / taxa names.

In joey711/phyloseq: Handling and analysis of high-throughput microbiome census data

Get species / taxa names.

Description

Get species / taxa names.

Usage

taxa_names(physeq)

## S4 method for signature 'ANY'
taxa_names(physeq)

## S4 method for signature 'phyloseq'
taxa_names(physeq)

## S4 method for signature 'otu_table'
taxa_names(physeq)

## S4 method for signature 'taxonomyTable'
taxa_names(physeq)

## S4 method for signature 'sample_data'
taxa_names(physeq)

## S4 method for signature 'phylo'
taxa_names(physeq)

## S4 method for signature 'XStringSet'
taxa_names(physeq)

Arguments

physeq

phyloseq-class, otu_table-class, taxonomyTable-class, or phylo

Value

A character vector of the names of the species in physeq.

See Also

ntaxa

Examples

#
data("esophagus")
tree <- phy_tree(esophagus)
OTU1 <- otu_table(esophagus)
taxa_names(tree)
taxa_names(OTU1)
physeq1 <- phyloseq(OTU1, tree)
taxa_names(physeq1)

joey711/phyloseq documentation built on Nov. 4, 2022, 1:16 a.m.