taxa_sums: Returns the total number of individuals observed from each...
In joey711/phyloseq: Handling and analysis of high-throughput microbiome census data
View source: R/otuTable-class.R
taxa_sums R Documentation
Returns the total number of individuals observed from each species/taxa/OTU.
Description
A convenience function equivalent to rowSums or colSums, but where
the orientation of the otu_table is automatically handled.
Usage
taxa_sums(x)
Arguments
x
otu_table-class, or phyloseq-class.
Value
A numeric-class with length equal to the number of species
in the table, name indicated the taxa ID, and value equal to the sum of
all individuals observed for each taxa in x.
See Also
sample_sums, rowSums, colSums
Examples
data(enterotype)
taxa_sums(enterotype)
data(esophagus)
taxa_sums(esophagus)
joey711/phyloseq documentation built on Nov. 4, 2022, 1:16 a.m.
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View source: R/otuTable-class.R
| taxa_sums | R Documentation |
Returns the total number of individuals observed from each species/taxa/OTU.
Description
A convenience function equivalent to rowSums or colSums, but where the orientation of the otu_table is automatically handled.
Usage
taxa_sums(x)
Arguments
x |
|
Value
A numeric-class with length equal to the number of species
in the table, name indicated the taxa ID, and value equal to the sum of
all individuals observed for each taxa in x.
See Also
sample_sums, rowSums, colSums
Examples
data(enterotype) taxa_sums(enterotype) data(esophagus) taxa_sums(esophagus)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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