compute_SemSim_sign: Computes pairwise semantic similarities between the...
In johannesnicolaus/ASURAT_source: Assisting Interpretable Classifications in Single-cell Transcriptomics
Description
Usage
Arguments
Value
Examples
Description
Computes pairwise semantic similarities between the biological terms
Usage
1
compute_SemSim_sign(obj, data_type, measure, orgdb, treeTable = NULL, IC)
Arguments
obj
ASURAT object.
measure
Argument of GOSemSim() function: "Resnik", "Rel", "Jiang", or "Lin".
orgdb
Annotation data package (e.g. org.Hs.eg.db, org.Mm.eg.db)
treeTable
? ***Need clarification***
IC
? ***Need clarification***
Value
ASURAT object.
Examples
1
2
3
compute_SemSim_sign(obj = object, data_type = "DO",
measure = "Jiang", orgdb = NULL,
treeTable = NULL, IC = IC_DO)
johannesnicolaus/ASURAT_source documentation built on Dec. 21, 2021, 2:11 a.m.
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Description Usage Arguments Value Examples
Description
Computes pairwise semantic similarities between the biological terms
Usage
1 | compute_SemSim_sign(obj, data_type, measure, orgdb, treeTable = NULL, IC)
|
Arguments
obj |
ASURAT object. |
measure |
Argument of GOSemSim() function: "Resnik", "Rel", "Jiang", or "Lin". |
orgdb |
Annotation data package (e.g. org.Hs.eg.db, org.Mm.eg.db) |
treeTable |
? ***Need clarification*** |
IC |
? ***Need clarification*** |
Value
ASURAT object.
Examples
1 2 3 | compute_SemSim_sign(obj = object, data_type = "DO",
measure = "Jiang", orgdb = NULL,
treeTable = NULL, IC = IC_DO)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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