do_quickQC: Perform quick QC
In johannesnicolaus/ASURAT_source: Assisting Interpretable Classifications in Single-cell Transcriptomics
Description
Usage
Arguments
Value
Examples
Description
Perform quick quality control by removing variables for which the number of
non-zero expressing samples is less than min_nsamples. ***Explanation unclear***
Usage
1
do_quickQC(obj, min_nsamples, mitochondria_symbol)
Arguments
obj
ASURAT object.
min_nsamples
***Need clarification***
mitochondria_symbol
Regex for mitochondrial genes (e.g. "^MT-").
Value
ASURAT object.
Examples
1
2
do_quickQC(obj = pbmc_4000, min_nsamples = 10,
mitochondria_symbol = "^MT-")
johannesnicolaus/ASURAT_source documentation built on Dec. 21, 2021, 2:11 a.m.
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Description Usage Arguments Value Examples
Description
Perform quick quality control by removing variables for which the number of non-zero expressing samples is less than min_nsamples. ***Explanation unclear***
Usage
1 | do_quickQC(obj, min_nsamples, mitochondria_symbol)
|
Arguments
obj |
ASURAT object. |
min_nsamples |
***Need clarification*** |
mitochondria_symbol |
Regex for mitochondrial genes (e.g. "^MT-"). |
Value
ASURAT object.
Examples
1 2 | do_quickQC(obj = pbmc_4000, min_nsamples = 10,
mitochondria_symbol = "^MT-")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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