format_KEGG: Format KEGG database to be ASURAT-friendly
In johannesnicolaus/ASURAT_source: Assisting Interpretable Classifications in Single-cell Transcriptomics
Description
Usage
Arguments
Value
Examples
Description
Format KEGG database to be ASURAT-friendly
Usage
1
format_KEGG(dict)
Arguments
dict
list of KEGG pathways imported ***Please clarify***
Value
Formatted KEGG dictionary ***Please clarify***
Examples
1
2
3
dict_KEGG_raw <- collect_KEGG(organism = "hsa", category_names = c("pathway"))
dict_KEGG <- list(pathway = dict_KEGG_raw[["pathway"]][["success"]])
tidy_KEGG <- format_KEGG(dict = dict_KEGG)
johannesnicolaus/ASURAT_source documentation built on Dec. 21, 2021, 2:11 a.m.
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Description Usage Arguments Value Examples
Description
Format KEGG database to be ASURAT-friendly
Usage
1 | format_KEGG(dict)
|
Arguments
dict |
list of KEGG pathways imported ***Please clarify*** |
Value
Formatted KEGG dictionary ***Please clarify***
Examples
1 2 3 | dict_KEGG_raw <- collect_KEGG(organism = "hsa", category_names = c("pathway"))
dict_KEGG <- list(pathway = dict_KEGG_raw[["pathway"]][["success"]])
tidy_KEGG <- format_KEGG(dict = dict_KEGG)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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