system_log_debug_save: Save variables to files

In john-harrold/ubiquity: PKPD, PBPK, and Systems Pharmacology Modeling Tools

Save variables to files

Description

Triggered when debugging is enabled, this function will save the contents of values to the specified file name in the ubiquity temporary directory.

Usage

system_log_debug_save(cfg, file_name = "my_file", values = NULL)

Arguments

cfg	ubiquity system object
file_name	name of the save file without the ".RData" extension
values	named list of variables to save

Value

Boolean variable indicating success

Examples

# Creating a system file from the mab_pk example
fr = system_new(file_name        = "system.txt", 
                system_file      = "mab_pk", 
                overwrite        = TRUE, 
                output_directory = tempdir())

# Building the system 
cfg = build_system(system_file  = file.path(tempdir(), "system.txt"),
      output_directory          = file.path(tempdir(), "output"),
      temporary_directory       = tempdir())

# enable debugging:
cfg=system_set_option(cfg,group = "logging", 
                         option = "debug", 
                         value  = TRUE)

# Saving the cfg variable 
system_log_debug_save(cfg, 
   file_name = 'my_file',
   values = list(cfg=cfg))

john-harrold/ubiquity documentation built on June 11, 2025, 1:34 a.m.