abhgeno: Rice F2 genotype data
In johncarlosignacio/gtmask: Mask erroneous double recombinations calls in genetic maps
Description
Usage
Format
Examples
Description
Genotypic data from a QTL mapping experiment
Rice, with data on 200 F2 lines (IR64 x ASD1) and 3436 SNP markers.
Usage
1
Format
An object of class "list"; imported with readABHgenotypes from ABHgenotypeR.
Examples
1
2
3
4
5
6
data(abhgeno)
j <- imputeByFlanks(abhgeno)
h <- correctUndercalledHets(j, 10)
k <- correctStretches(h, 7)
l <- maskTransitionSites(k, 4)
m <- maskChromosomeEnds(l, 4)
johncarlosignacio/gtmask documentation built on Dec. 21, 2021, 2:12 a.m.
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Description Usage Format Examples
Description
Genotypic data from a QTL mapping experiment Rice, with data on 200 F2 lines (IR64 x ASD1) and 3436 SNP markers.
Usage
1 |
Format
An object of class "list"; imported with readABHgenotypes from ABHgenotypeR.
Examples
1 2 3 4 5 6 | data(abhgeno)
j <- imputeByFlanks(abhgeno)
h <- correctUndercalledHets(j, 10)
k <- correctStretches(h, 7)
l <- maskTransitionSites(k, 4)
m <- maskChromosomeEnds(l, 4)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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