maskChromosomeEnds: Masking of double recombinations at chromosome ends
In johncarlosignacio/gtmask: Mask erroneous double recombinations calls in genetic maps
Description
Usage
Arguments
Examples
Description
Sets double recombination calls at the start and end of chromosomes to missing, e.g. in the chromosome start sequence of 5'-AAHH or end sequence BBAA-3', both AAs are replaced by NN.
Usage
1
maskChromosomeEnds(inputGenos, maxHapLength = 1)
Arguments
inputGenos
ABH genotype file to mask.
maxHapLength
Max length (in number of markers) of double recombination haplotype to set to missing. Default is 1.
Examples
1
2
3
data(abhgeno)
g <- maskChromosomeEnds(abhgeno, 4)
g
johncarlosignacio/gtmask documentation built on Dec. 21, 2021, 2:12 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Examples
Description
Sets double recombination calls at the start and end of chromosomes to missing, e.g. in the chromosome start sequence of 5'-AAHH or end sequence BBAA-3', both AAs are replaced by NN.
Usage
1 | maskChromosomeEnds(inputGenos, maxHapLength = 1)
|
Arguments
inputGenos |
ABH genotype file to mask. |
maxHapLength |
Max length (in number of markers) of double recombination haplotype to set to missing. Default is 1. |
Examples
1 2 3 | data(abhgeno)
g <- maskChromosomeEnds(abhgeno, 4)
g
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.