maskTransitionSites: Masking of double recombinations at homozygous-heterozygous...
In johncarlosignacio/gtmask: Mask erroneous double recombinations calls in genetic maps

Sets short double recombination calls to missing, e.g. in the sequence HHAABB, AA is replaced by missing data, NN.

1	maskTransitionSites(inputGenos, maxHapLength = 1)

`inputGenos`	ABH genotype file to mask.
`maxHapLength`	Max length (in number of markers) of double recombination haplotype to set to missing. Default is 1.

# replaces double recombination transitions up to 4 marker lengths
data(abhgeno)
g <- maskTransitionSites(abhgeno, 4)
g

johncarlosignacio/gtmask documentation built on Dec. 21, 2021, 2:12 a.m.

johncarlosignacio/gtmask index

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

Description