Man pages for johrpan/geposan
Gene Position Analysis

adjacency	Score genes based on their proximity to the reference genes.
all_methods	Get a list of all available methods.
analyze	Analyze genes based on position data.
chromosomes	Information on chromosomes for each included species.
clusteriness	Perform a cluster analysis.
clustering	Process genes clustering their distance to telomeres.
compare	Compare a set of genes with the ranking.
correlation	Score genes based on their correlation with the reference...
densest	Find the densest value in the data.
distance	Score the distance of genes to the telomeres across species.
distances	Information on gene positions across species.
genes	Information on human genes within the Ensembl database.
method	Describe a new method for analyzing gene position data.
optimal_weights	Find the best weights to rank the results.
plot_boxplot	Visualize a ranking by comparing gene sets in a boxplot.
plot_chromosomes	Show the distribution of scores across chromosomes.
plot_positions	Plot gene positions.
plot_rankings	Plot a side-by-side comparison of multiple rankings.
plot_rankings_correlation	Plot a scatter plot to compare two rankings.
plot_scores	Plot a ranking as a scatter plot of scores.
plot_scores_by_position	Plot scores in relation to chromosomal position of genes.
preset	Create a new preset.
print.geposan_analysis	Print an analysis object.
print.geposan_comparison	S3 method to print a comparison object.
print.geposan_method	Print a method object.
print.geposan_preset	S3 method to print a preset object.
print.geposan_result	Print a result object.
print.geposan_validation	S3 method to print a validation object.
random_forest	Predict scores using a random forest.
ranking	Rank the results by computing a score.
result	Result of applying a method on gene position data.
species	Information on included species from the Ensembl database.
validate	Perform cross-validation for the ranking.