adjacency: Score genes based on their proximity to the reference genes.

In johrpan/geposan: Gene Position Analysis

Score genes based on their proximity to the reference genes.

Description

In this case, the distance data that is available for one gene is first combined. The resulting value is compared to the reference genes and determines the gene's score in relation to other genes.

Usage

adjacency(
  id = "adjacency",
  name = "Adjacency",
  description = "Adjacency to reference genes",
  distance_estimate = densest
)

Arguments

id	Unique ID for the method and its results.
name	Human readable name for the method.
description	Method description.
distance_estimate	A function that will be used to summarize the distance values for each gene. See densest() for the default implementation.

Value

An object of class geposan_method.

johrpan/geposan documentation built on Feb. 28, 2025, 3:48 a.m.