#'
#' ggplot2 themes in statds
#'
mytheme_common_text <-
function(base_size = 20,
base_family = "",
#"mono",#serif or sans
number_family = "",
#"mono",#serif or sans
legend = c(0.95, 0.05),
#"right",
margin.top = 1,
margin.side = 1,
angle.text.x = 0,
angle.text.y = 0,
angle.title.x = 0,
angle.title.y = 90) {
half_line = base_size / 2
axis.x.hjust = NULL
axis.y.hjust = NULL
if (angle.text.x != 0) {
axis.x.hjust = 0
}
if (angle.text.x == 90) {
axis.x.hjust = 0.95
}
if (angle.text.y != 0) {
axis.y.hjust = 1
}
if (angle.text.y == 90) {
axis.y.hjust = 0.5
}
theme(
text = element_text(
family = base_family,
face = "plain",
colour = "black",
size = base_size,
lineheight = 0.9,
hjust = 0.5,
vjust = 0.5,
angle = 0,
margin = margin(),
debug = FALSE
),
axis.text = element_text(
family = number_family,
size = rel(0.8),
colour = "black"
),
axis.text.x = element_text(
margin = margin(t = 0.8 * half_line / 2),
angle = angle.text.x,
hjust = axis.x.hjust,
vjust = 0.2
),
axis.text.x.top = element_text(
margin = margin(b = 0.8 *half_line /2),
vjust = 0
),
axis.text.y = element_text(
margin = margin(r = 0.8 * half_line / 2),
hjust = axis.y.hjust,
angle = angle.text.y
),
axis.text.y.right = element_text(
margin = margin(l = 0.8 *half_line /2),
hjust = 0
),
axis.ticks = element_line(colour = "black"),
axis.ticks.length = unit(half_line / 2, "pt"),
axis.ticks.length.x = NULL,
axis.ticks.length.x.top = NULL,
axis.ticks.length.x.bottom = NULL,
axis.ticks.length.y = NULL,
axis.ticks.length.y.left = NULL,
axis.ticks.length.y.right = NULL,
axis.title = element_text(
family = base_family,
size = base_size
),
axis.title.x = element_text(
family = base_family,
margin = margin(t = 0.8 * half_line, b = 0.8 * half_line / 2),
angle = angle.title.x,
vjust = -1.0,
hjust = 0.5
),
axis.title.x.top = element_text(
margin = margin(b = half_line / 2),
vjust = 0
),
axis.title.y = element_text(
family = base_family,
vjust = 1,
hjust = 0.5,
angle = angle.title.y,
margin = margin(r = 0.8 * half_line, l = 0.8 * half_line / 2)
),
axis.title.y.right = element_text(
angle = -90,
margin = margin(l = half_line / 2),
vjust = 0
),
legend.background = element_rect(colour = NA),
# legend.spacing = unit(0.4, "cm"),
legend.spacing = unit(2 * half_line, "pt"),
legend.spacing.x = NULL,
legend.spacing.y = NULL,
# legend.margin = margin(6, 6, 6, 6, "pt"),
# legend.margin = unit(0.2, "cm"),
legend.margin = margin(half_line,
half_line, half_line, half_line),
legend.key = element_rect(fill = NA, colour = NA),
legend.key.size = unit(1.2, "lines"),
legend.key.height = NULL,
legend.key.width = unit(1.2,"cm"),
legend.text = element_text(
family = base_family,
size = rel(0.8)
),
legend.text.align = NULL,
legend.title = element_blank(),
legend.title.align = NULL,
legend.position = legend,
legend.direction = NULL,
legend.justification = round(legend),
legend.box = NULL,
legend.box.margin = margin(0, 0, 0,
0, "cm"),
legend.box.background = element_rect(
colour = "grey50"
),
legend.box.spacing = unit(2 * half_line, "pt"),
#
panel.background = element_rect(
fill = "grey92",
colour = NA
),
panel.border = element_blank(),
panel.grid = element_line(colour = "white"),
panel.grid.minor = element_line(size = rel(0.5)),
panel.spacing = unit(half_line, "pt"),
panel.spacing.x = NULL,
panel.spacing.y = NULL,
panel.ontop = FALSE,
#
strip.text = element_text(
family = base_family,
colour = "black",
size = rel(0.8)
),
strip.text.x = element_text(margin = margin(t = half_line, b = half_line)),
strip.text.y = element_text(
angle = -90,
margin = margin(l = half_line, r = half_line)
),
strip.placement = "inside",
strip.placement.x = NULL,
strip.placement.y = NULL,
strip.switch.pad.grid = unit(half_line / 2,
"pt"),
strip.switch.pad.wrap = unit(half_line / 2,
"pt"),
#
plot.background = element_rect(colour = "white"),
plot.title = element_text(size = rel(1.2), margin = margin(b = half_line * 1.2)),
plot.subtitle = element_text(
hjust = 0,
vjust = 1,
margin = margin(b = half_line)
),
plot.caption = element_text(
size = rel(0.8),
hjust = 1,
vjust = 1,
margin = margin(t = half_line)
),
plot.tag = element_text(
size = rel(1.2),
hjust = 0.5,
vjust = 0.5
),
plot.tag.position = "topleft",
plot.margin = margin(
half_line * margin.top,
half_line * margin.top,
half_line * margin.side,
half_line * margin.side
),
complete = TRUE
)
}
mytheme_grey = function (base_size = 20,
base_family = "",
#"mono",#serif or sans
number_family = "",
#"mono",#serif or sans
legend = c(0.95, 0.05),
margin.top = 1,
margin.side = 1,
angle.text.x = 0,
angle.text.y = 0,
angle.title.x = 0,
angle.title.y = 90,
panel.border.colour = NA,
#"grey50",
panel.grid.major.colour = NA,
#"grey50",
panel.grid.minor.colour = NA) {
#"grey90") {
half_line = base_size / 2
mytheme_common_text(
base_size,
base_family,
number_family,
legend,
margin.top,
margin.side,
angle.text.x,
angle.text.y,
angle.title.x,
angle.title.y
) %+replace%
theme(
line = element_line(
colour = "black",
size = 0.5,
linetype = 1,
lineend = "butt"
),
rect = element_rect(
fill = "white",
colour = "black",
size = 0.5,
linetype = 1
),
#
axis.line = element_blank(),
axis.line.x = element_blank(),
axis.line.y = element_blank(),
axis.ticks = element_line(colour = "grey20"),
axis.ticks.length = unit(half_line / 2, "pt"),
#
panel.background = element_rect(fill = "grey92", colour = NA),
panel.border = element_blank(),
panel.grid.major = element_line(colour = "white"),
panel.grid.minor = element_line(colour = "white", size = 0.25),
# panel.margin = unit(half_line, "pt"),
# panel.margin.x = NULL,
# panel.margin.y = NULL,
panel.spacing = unit(half_line, "pt"),
panel.spacing.x = NULL,
panel.spacing.y = NULL,
panel.ontop = FALSE,
#
strip.background = element_rect(fill = "grey85", colour = NA),
strip.switch.pad.grid = unit(0.1, "cm"),
strip.switch.pad.wrap = unit(0.1, "cm"),
#
plot.background = element_rect(colour = "white"),
#
complete = TRUE
)
}
#' @export
#' @rdname ggtheme
mytheme_gray = mytheme_grey
#' @export
#' @rdname ggtheme
mytheme_bw = function (base_size = 20, ...)
{
mytheme_grey(base_size = base_size, ...) %+replace%
theme(
axis.text = element_text(size = rel(0.8)),
axis.ticks = element_line(colour = "black"),
panel.background = element_rect(fill = "white", colour = NA),
panel.border = element_rect(fill = NA, colour = "grey50"),
panel.grid.major = element_line(colour = "grey90", size = 0.2),
panel.grid.minor = element_line(colour = "grey98", size = 0.5),
strip.background = element_rect(fill = "grey85", colour = "grey20"),
legend.key = element_rect(fill = "white", colour = NA),
complete = TRUE
)
}
#' @export
#' @rdname ggtheme
mytheme_linedraw <- function (base_size = 20, ...) {
half_line <- base_size / 2
# Starts with theme_grey and then modify some parts
mytheme_grey(base_size = base_size, ...) %+replace%
theme(
axis.text = element_text(colour = "black", size = rel(0.8)),
axis.ticks = element_line(colour = "black", size = 0.25),
legend.key = element_rect(colour = "black", size = 0.25),
panel.background = element_rect(fill = "white", colour = NA),
panel.border = element_rect(
fill = NA,
colour = "black",
size = 0.5
),
panel.grid.major = element_line(colour = "black", size = 0.05),
panel.grid.minor = element_line(colour = "black", size = 0.01),
strip.background = element_rect(fill = "black", colour = NA),
strip.text.x = element_text(
colour = "white",
margin = margin(t = half_line, b = half_line)
),
strip.text.y = element_text(
colour = "white",
angle = 90,
margin = margin(l = half_line, r = half_line)
)
)
}
#' @export
#' @rdname ggtheme
mytheme_light <- function (base_size = 20, ...) {
half_line <- base_size / 2
# Starts with theme_grey and then modify some parts
mytheme_grey(base_size = base_size, ...) %+replace%
theme(
axis.ticks = element_line(colour = "grey70", size = 0.25),
legend.key = element_rect(
fill = "white",
colour = "grey50",
size = 0.25
),
panel.background = element_rect(fill = "white", colour = NA),
panel.border = element_rect(
fill = NA,
colour = "grey70",
size = 0.5
),
panel.grid.major = element_line(colour = "grey85", size = 0.25),
panel.grid.minor = element_line(colour = "grey93", size = 0.125),
strip.background = element_rect(fill = "grey70", colour = NA),
strip.text.x = element_text(
colour = "white",
margin = margin(t = half_line, b = half_line)
),
strip.text.y = element_text(
colour = "white",
angle = 90,
margin = margin(l = half_line, r = half_line)
)
)
}
#' @export
#' @rdname ggtheme
mytheme_minimal <- function (base_size = 20, ...) {
# Starts with theme_bw and then modify some parts
mytheme_grey(base_size = base_size, ...) %+replace%
theme(
legend.background = element_blank(),
legend.key = element_blank(),
panel.background = element_blank(),
panel.border = element_blank(),
strip.background = element_blank(),
plot.background = element_blank(),
axis.ticks = element_blank(),
axis.ticks.length = unit(0, "lines")
)
}
#' @export
#' @rdname ggtheme
mytheme_classic <- function (base_size = 20, ...) {
mytheme_grey(base_size = base_size, ...) %+replace%
theme(
panel.border = element_blank(),
axis.line = element_line(colour = "black"),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
strip.background = element_rect(colour = "black", size = 0.5),
legend.key = element_blank()
)
}
#' @export
#' @rdname ggtheme
mytheme_dark <- function (base_size = 20, ...) {
half_line <- base_size / 2
# Starts with theme_grey and then modify some parts
mytheme_grey(base_size = base_size, ...) %+replace%
theme(
axis.ticks = element_line(colour = "grey40", size = 0.25),
legend.key = element_rect(
fill = "grey50",
colour = "grey40",
size = 0.25
),
panel.background = element_rect(fill = "grey50", colour = NA),
panel.grid.major = element_line(colour = "grey40", size = 0.25),
panel.grid.minor = element_line(colour = "grey45", size = 0.125),
strip.background = element_rect(fill = "grey20", colour = NA),
strip.text.x = element_text(
colour = "white",
margin = margin(t = half_line, b = half_line)
),
strip.text.y = element_text(
colour = "white",
angle = 90,
margin = margin(l = half_line, r = half_line)
)
)
}
#' @export
#' @rdname ggtheme
mytheme_simple <- function (base_size = 20, ...) {
mytheme_grey(base_size = base_size, ...) %+replace%
theme(
panel.border = element_blank(),
axis.line = element_line(colour = "black"),
axis.line.x = element_blank(),
axis.line.y = element_blank(),
#panel.grid.major = element_blank(),
#panel.grid.minor = element_blank(),
axis.ticks = element_blank(),
axis.ticks.length = unit(0, "lines"),
axis.text = element_blank(),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
strip.background = element_rect(colour = "black", size = 0.5),
legend.key = element_blank(),
panel.background = element_blank(),
plot.background = element_blank()
)
}
mytheme_simple_x <- function (base_size = 20, ...) {
mytheme_grey(base_size = base_size, ...) %+replace%
theme(
panel.border = element_blank(),
axis.line = element_line(colour = "black"),
axis.line.x = element_line(colour = "black"),
axis.line.y = element_blank(),
#panel.grid.major = element_line(colour = "black"),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
axis.ticks = element_blank(),
axis.ticks.length = unit(0, "lines"),
axis.text = element_blank(),
strip.background = element_rect(colour = "black", size = 0.5),
panel.background = element_blank(),
plot.background = element_blank(),
legend.key = element_blank()
)
}
mytheme_simple_y <- function (base_size = 20, ...) {
mytheme_grey(base_size = base_size, ...) %+replace%
theme(
panel.border = element_blank(),
axis.line = element_line(colour = "black"),
axis.line.x = element_blank(),
axis.line.y = element_line(colour = "black"),
#panel.grid.major = element_line(colour = "black"),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
axis.ticks = element_blank(),
#axis.ticks.length = unit(0, "lines"),
axis.text = element_blank(),
strip.background = element_rect(colour = "black", size = 0.5),
panel.background = element_blank(),
plot.background = element_blank(),
legend.key = element_blank()
)
}
mytheme_simple_xy <-
function (base_size = 20,
colour = "grey70",
size = 0.5,
linetype = 1,
ticks = F,
...) {
mytheme_grey(base_size = base_size, ...) %+replace%
theme(
panel.border = element_blank(),
axis.line = element_line(
colour = colour,
size = size,
linetype = linetype
),
axis.line.x = element_line(colour = colour),
axis.line.y = element_line(colour = colour),
#panel.grid.major = element_line(colour = "black"),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
axis.ticks = if (!ticks)
element_blank()
else
element_line(colour = "grey40", size = 0.25),
axis.ticks.length = if (!ticks)
unit(0, "lines")
else
unit(0.5, "lines"),
axis.text = if (!ticks)
element_blank()
else
element_text(colour = "black", size = rel(0.8)),
strip.background = element_rect(colour = colour, size = 0.5),
panel.background = element_blank(),
legend.key = element_blank(),
plot.background = element_blank()
)
}
mytheme_seaborn <- function (base_size = 20,
base_family = "",
#"mono",#serif or sans
number_family = "",
#"mono",#serif or sans
legend = c(0.95, 0.05),
margin.top = 1,
margin.side = 1,
angle.text.x = 0,
angle.text.y = 0,
angle.title.x = 0,
angle.title.y = 90,
panel.border.colour = NA,
#"grey50",
panel.grid.major.colour = NA,
#"grey50",
panel.grid.minor.colour = NA,
#"grey90"
...) {
half_line <- base_size / 2
mytheme_grey(
base_size = base_size,
base_family = base_family,
number_family = number_family,
legend = legend,
margin.top = margin.top,
margin.side = margin.side,
angle.text.x = angle.text.x,
angle.text.y = angle.text.y,
angle.title.x = angle.title.x,
angle.title.y = angle.title.y,
panel.border.colour = panel.border.colour,
panel.grid.major.colour = panel.grid.major.colour,
panel.grid.minor.colour = panel.grid.minor.colour,
...
) %+replace%
theme(
# Elements in this first block aren't used directly, but are inherited
# by others
line = element_line(
colour = "black",
size = 0.5,
linetype = 1,
lineend = "butt"
),
rect = element_rect(
fill = "white",
colour = "black",
size = 0.5,
linetype = 1
),
text = element_text(
family = base_family,
face = "plain",
colour = "black",
size = base_size,
lineheight = 0.9,
hjust = 0.5,
vjust = 0.5,
angle = 0,
margin = margin(),
debug = FALSE
),
#title=element_text(),
#aspect.ratio=1,
axis.line = element_line(colour = "black", size = 0.75),
axis.line.x = element_line(colour = "black", size = 0.75),
axis.line.y = element_line(colour = "black", size = 0.75),
# axis.text = element_text(
# family=number_family,
# size = rel(0.8),
# colour = "black"),
# # axis.text.x = element_text(
# margin = margin(t = 0.8 * half_line / 2),
# angle = angle.text.x,
# hjust=0.95,vjust=0.2),
# axis.text.y = element_text(
# margin = margin(r = 0.8 * half_line / 2),
# hjust = 1,
# angle=angle.text.y),
axis.ticks = element_line(colour = "black", size = 0.5),
axis.ticks.length = unit(half_line / 1, "pt"),
# axis.ticks.x = element_line(),
# axis.ticks.y = element_line(),
# axis.line = element_blank(),
# axis.line.x = element_line(),
# axis.line.y = element_line(),
# axis.title = element_text(family=base_family, size=base_size, colour="black"),#"grey30"),
axis.title.x = element_text(
family = base_family,
margin = margin(t = 0.8 * half_line, b = 0.8 * half_line / 2),
angle = angle.title.x,
vjust = -1.0,
hjust = 0.5
),
axis.title.y = element_text(
family = base_family,
vjust = 1,
hjust = 0.5,
angle = angle.title.y,
margin = margin(r = 0.8 * half_line, l = 0.8 * half_line / 2)
),
# legend.background = element_rect(colour = NA),
# legend.margin = unit(0.2, "cm"),
# legend.key = element_rect(fill = "grey95", colour = "white"),
# legend.key.size = unit(1.2, "lines"),
# legend.key.height = NULL,
# legend.key.width = NULL,
legend.text = element_text(family = base_family, size = rel(0.8)),
# legend.text.align = NULL,
# legend.title = element_text(family=base_family, hjust=0),
# legend.title.align = NULL,
# legend.position = legend,
# legend.direction = NULL,
# legend.justification = "center",
# legend.box = NULL,
#legend.box.just = "top",
panel.background = element_blank(),
panel.border = element_blank(),
panel.grid.major = element_line(colour = "grey80", size = 0.25),
#panel.grid.major.x = element_line(),
#panel.grid.major.y = element_line(),
panel.grid.minor = element_line(colour = "grey90", size = 0.1),
#panel.grid.minor.x = element_line(size = 0.25),
#panel.grid.minor.y = element_line(size = 0.25),
# panel.margin = unit(half_line, "pt"),
# panel.margin.x = NULL,
# panel.margin.y = NULL,
# panel.grid = element_line(colour = "white"),
panel.ontop = FALSE,
strip.background = element_blank(),
#element_rect(fill = "grey85", colour=NA),
strip.text = element_text(colour = "black", size = rel(0.8)),
strip.text.x = element_text(margin = margin(t = half_line, b = half_line)),
strip.text.y = element_text(
angle = -90,
margin = margin(l = half_line, r = half_line)
),
strip.switch.pad.grid = unit(0.1, "cm"),
strip.switch.pad.wrap = unit(0.1, "cm"),
plot.background = element_rect(colour = "white"),
plot.title = element_text(size = rel(1.2),
margin = margin(b = half_line * 1.2)),
plot.margin = margin(
half_line * margin.top,
half_line * margin.top,
half_line * margin.side,
half_line * margin.side
),
complete = TRUE
)
}
mytheme_simplest <-
function (base_size = 20,
col.panel.border = NA,
col.axis.line = NA,
col.axis.title = NA,
col.strip = NA,
...) {
element_panel.border = element_blank()
if (!is.na(col.panel.border))
element_panel.border = element_rect(fill = NA,
colour = col.panel.border,
size = 0.5)
element_axis.line = element_line(colour = col.axis.line)
element_axis.title = element_text(size = base_size, colour = col.axis.title)
element_strip = element_blank()
if (!is.na(col.strip))
element_strip = element_text(colour = col.strip, size = rel(0.8))
mytheme_grey(base_size = base_size, ...) %+replace%
theme(
panel.border = element_panel.border,
axis.title.x = element_axis.title,
axis.title.y = element_axis.title,
axis.line = element_axis.line,
axis.line.x = element_axis.line,
axis.line.y = element_axis.line,
#panel.grid.major = element_blank(),
#panel.grid.minor = element_blank(),
axis.ticks = element_blank(),
axis.ticks.length = unit(0, "lines"),
axis.text = element_blank(),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
strip.background = element_blank(),
strip.text = element_strip,
legend.key = element_blank(),
panel.background = element_blank(),
plot.background = element_blank()
)
}
mytheme_JPR <- function(base_size = 12,
base_family = "") {
half_line <- base_size / 2
mytheme_grey(base_size = base_size, ...) %+replace%
theme(
line = element_line(
colour = "black",
size = 0.5,
linetype = "solid",
lineend = "butt"
),
rect = element_rect(
fill = "white",
colour = "black",
size = 0.5,
linetype = "solid"
),
text = element_text(
family = base_family,
face = "plain",
colour = "black",
size = base_size,
hjust = 0.5,
vjust = 0.5,
angle = 0,
lineheight = 0.9,
margin = margin(),
debug = FALSE
),
axis.title.x = element_text(vjust = 0),
axis.title.y = element_text(vjust = 0, angle = 90),
axis.text = element_text(size = rel(1)),
axis.text.x = element_text(margin = margin(t = 0.8 * half_line / 2), vjust = 1),
axis.text.x.top = element_text(margin = margin(b = 0.8 * half_line /
2), vjust = 0),
axis.text.y = element_text(margin = margin(r = 0.8 * half_line / 2), hjust = 1),
axis.text.y.right = element_text(margin = margin(l = 0.8 * half_line /
2), hjust = 0),
axis.ticks = element_line(size = 1),
axis.ticks.length = unit(-0.2, "cm"),
# axis.ticks.margin = unit(0.4, "cm"),
axis.line = element_line(
colour = "#000000",
size = 1,
linetype = "solid",
lineend = "round"
),
legend.background = element_rect(colour = NA),
# legend.margin = unit(0.2, "cm"),
legend.key = element_rect(fill = NA, colour = NA),
legend.key.size = unit(1.2, "lines"),
legend.text = element_text(size = rel(0.8)),
legend.title = element_blank(),
legend.position = c(1, 1),
legend.justification = c(1, 1),
panel.background = element_rect(fill = "white", colour = NA),
panel.border = element_blank(),
# panel.margin = unit(0.25, "lines"),
panel.grid = element_blank(),
panel.grid.major = element_blank(),
panel.grid.minor = element_blank(),
panel.grid.major.x = element_blank(),
panel.grid.major.y = element_blank(),
panel.grid.minor.x = element_blank(),
panel.grid.minor.y = element_blank(),
plot.background = element_rect(colour = "white"),
plot.title = element_text(size = rel(1.2)),
# plot.margin = unit(c(1, 1, 1, 1), "lines"),
plot.margin = margin(half_line, half_line, half_line, half_line),
strip.background = element_rect(
fill = NA,
colour = "black",
size = 1
),
strip.text = element_text(size = rel(0.8)),
strip.text.y = element_text(angle = -90),
complete = TRUE
)
}
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