circos.heatmap.initialize: Initialize circular heatmaps

In jokergoo/circlize: Circular Visualization

Initialize circular heatmaps

Description

Initialize circular heatmaps

Usage

circos.heatmap.initialize(mat, split = NULL, cluster = TRUE,
    clustering.method = "complete", distance.method = "euclidean",
    dend.callback = function(dend, m, si) reorder(dend, rowMeans(m)),
    cell_width = rep(1, nrow(mat)))

Arguments

mat	A matrix or a vector. The vector is transformed as a one-column matrix.
split	A categorical variable. It splits the matrix into a list of matrices.
cluster	whether to apply clustering on rows. The value can also be a dendrogram/hclust object or other objects that can be converted to with as.dendrogram.
clustering.method	Clustering method, pass to hclust.
distance.method	Distance method, pass to dist.
dend.callback	A callback function that is applied to the dendrogram in every sector.
cell_width	Relative widths of heatmap cells.

See Also

https://jokergoo.github.io/2020/05/21/make-circular-heatmaps/

Examples

# There is no example
NULL

jokergoo/circlize documentation built on Nov. 17, 2023, 11:32 a.m.