circos.raster: Add raster images

In jokergoo/circlize: Circular Visualization

Add raster images

Description

Add raster images

Usage

circos.raster(
    image, x, y,
    width, height,
    facing = c("inside", "outside", "reverse.clockwise", "clockwise",
    "downward", "bending.inside", "bending.outside"),
    niceFacing = FALSE,
    sector.index = get.current.sector.index(),
    track.index = get.current.track.index(),
    scaling = 1)

Arguments

image	A raster object, or an object that can be converted by as.raster.
x	Position of the center of the raster image, measued in the data coordinate in the cell.
y	Position of the center of the raster image, measued in the data coordinate in the cell.
width	Width of the raster image. When facing is one of "inside", "outside", "clockwise" and "reverse.clockwise", the image should have absolute size where the value of width should be specified like 20mm, 1cm or 0.5inche. When facing is one of bending.inside and bending.outside, the value of width is measured in the data coordinate in the cell.
height	Height of the raster image. Same format as width. If the value of height is omit, default height is calculated by taking the aspect ratio of the original image. But when facing is one of bending.inside and bending.outside, height is mandatory to set.
facing	Facing of the raster image.
niceFacing	Facing of text. Please refer to vignette for different settings.
sector.index	Index for the sector.
track.index	Index for the track.
scaling	Scaling factor to resize the raster image.

See Also

https://jokergoo.github.io/circlize_book/book/graphics.html#raster-image

Examples

require(png)
image = system.file("extdata", "Rlogo.png", package = "circlize")
image = as.raster(readPNG(image))
circos.initialize(letters[1:8], xlim = c(0, 1))
circos.track(ylim = c(0, 1), panel.fun = function(x, y) {
    circos.raster(image, CELL_META$xcenter, CELL_META$ycenter, width = "2cm", 
        facing = "inside", niceFacing = TRUE)
})
circos.clear()

if(FALSE) {
# NOTE: following takes quite a long time to run
load(system.file("extdata", "doodle.RData", package = "circlize"))
circos.par("cell.padding" = c(0, 0, 0, 0))
circos.initialize(letters[1:16], xlim = c(0, 1))
circos.track(ylim = c(0, 1), panel.fun = function(x, y) {
    img = img_list[[CELL_META$sector.numeric.index]]
    circos.raster(img, CELL_META$xcenter, CELL_META$ycenter, width = 1, 
        height = 1, facing = "bending.inside")
}, track.height = 0.25, bg.border = NA)
circos.track(ylim = c(0, 1), panel.fun = function(x, y) {
    img = img_list[[CELL_META$sector.numeric.index + 16]]
    circos.raster(img, CELL_META$xcenter, CELL_META$ycenter, width = 1, 
        height = 1, facing = "bending.inside")
}, track.height = 0.25, bg.border = NA)
circos.clear()
}

jokergoo/circlize documentation built on Nov. 17, 2023, 11:32 a.m.