term_similarity: Similarity between terms based on the overlap of genes

In jokergoo/simplifyEnrichment: Simplify Functional Enrichment Results

Similarity between terms based on the overlap of genes

Description

Similarity between terms based on the overlap of genes

Usage

term_similarity(gl, method = c("kappa", "jaccard", "dice", "overlap"), all = NULL, remove_negative = TRUE)

Arguments

gl	A list of genes that are in the terms.
method	The similarity measurement.
all	The universe set.
remove_negative	If the value is negative, reset to zero

Details

The definition of the four similarity measurements can be found at https://jokergoo.github.io/simplifyEnrichment_supplementary/supplS01_coefficient_definition/supplS01_coefficient_definition.html .

Value

A symmetric matrix.

Examples

# There is no example
NULL

jokergoo/simplifyEnrichment documentation built on Nov. 3, 2023, 2:57 p.m.