View source: R/dotplotRegime.R
dotplotRegime | R Documentation |
Draw a plot of covariate-specific time-varying movements
dotplotRegime( out, hybrid = TRUE, start = 1, cex = 1, smooth.beta = TRUE, SE = FALSE, x.location = c("none", "random", "legend", "default"), order.state = 1, location.bar = 9, distance = 4, h = c(255, 330), l = c(40, 90), text.cex = 1, legend.position = "topright", pos = 1, select = NULL, main = "", raw = FALSE )
out |
output of HMBB |
hybrid |
If TRUE, DSS results are used for graph. Otherwise, HMBB results are used. |
start |
Starting value of the time sequence |
smooth.beta |
If TRUE, probabilistic estimates of hidden states (smooth) are used. Otherwise, discrete state values are used. |
SE |
If TRUE, draw 95 percent confidence interval. |
x.location |
x location of covariate name labels. If random, a random value (between min and max of x) is selected. If legend, it will be displayed in the top-right as a legend. If default, the labels will be shown in the above of the last regime estimates. |
distance |
Distance of text labels from the maximum value of x. Default is 4. |
h |
hue value in the HCL color description, has to be in [0, 360]. Default is c(255, 330). |
l |
luminance value in the HCL color description. Default is c(40, 90). |
thin |
The thinning interval used in the simulation. The number of MCMC iterations must be divisible by this value. |
verbose |
A switch which determines whether or not the progress of the
sampler is printed to the screen. If |
degree.normal |
A null model for degree correction. Users can choose "NULL", "eigen" or "Lsym." "NULL" is no degree correction. "eigen" is a principal eigen-matrix consisting of the first eigenvalue and the corresponding eigenvector. " Lsym" is a modularity matrix. Default is "eigen." |
UL.Normal |
Transformation of sampled U. Users can choose "NULL", "Normal" or "Orthonormal." "NULL" is no normalization. "Normal" is the standard normalization. "Orthonormal" is the Gram-Schmidt orthgonalization. Default is "NULL." |
v0 |
v_0/2 is the shape parameter for the inverse
Gamma prior on variance parameters for V.
If |
v1 |
v_1/2 is the scale parameter for the
inverse Gamma prior on variance parameters for V.
If |
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