getExonProtBoundary: Get amino acid sequence ranges residing in each exon
In josef0731/CDSMutSig: Mapping Coding Sequences between DNA Mutational signatures and Amino Acid Changes
Description
Usage
Arguments
Value
View source: R/genetic_code_sav.R
Description
Given a GRanges object of exon boundaries, this function determines
the range of amino acids residing in each exon. Split AA will appear in both exons.
Usage
1
getExonProtBoundary(GRangesObj)
Arguments
GRangesObj
A GRangeObj containing boundaries of each exon in the coding sequence. Generated internally in mapCodon.
Value
A data.frame with six columns:
exon: exon number
lengths: length (in nucleotides) of the exon
prot_start: amino acid position at the beginning of the exon
prot_end: amino acid position at the end of the exon
carried_forfward: the number of nucleotides from the previous exon which does not yield a complete codon.
accu_length: running sum of length (in nucleotides) of the coding DNA sequence.
josef0731/CDSMutSig documentation built on Dec. 21, 2021, 2:19 a.m.
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Description Usage Arguments Value
View source: R/genetic_code_sav.R
Description
Given a GRanges object of exon boundaries, this function determines the range of amino acids residing in each exon. Split AA will appear in both exons.
Usage
1 | getExonProtBoundary(GRangesObj)
|
Arguments
GRangesObj |
A |
Value
A data.frame with six columns:
exon: exon number
lengths: length (in nucleotides) of the exon
prot_start: amino acid position at the beginning of the exon
prot_end: amino acid position at the end of the exon
carried_forfward: the number of nucleotides from the previous exon which does not yield a complete codon.
accu_length: running sum of length (in nucleotides) of the coding DNA sequence.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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