contMCMC_CMR: Function to continue sampling a fit, without adaptation.
In josteist/Compadre: Analysis of Macroevolutionary Rates of Speciation, Extinction and Sampling using Capture-Mark-Recapture techniques
Description
Usage
Arguments
Value
Description
After an initial trial with MCMC_CMR which has seemingly reasonable mixing, this function
can be used to continue sampling using the estimated covariance proposal matrix.
Usage
1
contMCMC_CMR(fit, x0 = NULL, niter = 1e+05, nthin = 10, ...)
Arguments
fit
is the output from MCMC_CMR
x0
is the initial parameter values for continued sampling. If not given taken as the last parameter set from fit
niter
is the number of iterations
nthin
is the thinning of the chain
Value
a fit structure of class CMR_fit
josteist/Compadre documentation built on June 3, 2021, 1:02 p.m.
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Description Usage Arguments Value
Description
After an initial trial with MCMC_CMR which has seemingly reasonable mixing, this function can be used to continue sampling using the estimated covariance proposal matrix.
Usage
1 | contMCMC_CMR(fit, x0 = NULL, niter = 1e+05, nthin = 10, ...)
|
Arguments
fit |
is the output from MCMC_CMR |
x0 |
is the initial parameter values for continued sampling. If not given taken as the last parameter set from fit |
niter |
is the number of iterations |
nthin |
is the thinning of the chain |
Value
a fit structure of class CMR_fit
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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